R package for the relative quantification of proteoform positional isomers (QPI) from MS2 scan data
devtools::install_github("EMSL-Computing/isoforma-lib")
To get started, read our vignette
You may need to install pspecterlib separately, though it should auto-install
with the above command. If not, try the command below. Check that both packages
install with library(isoforma) and library(pspecterlib). If one of the
packages does not install,
devtools::install_github("EMSL-Computing/pspecterlib")
The package has been succesfully installed on an Apple M1 Max using 13.6.1 and a Windows PC running Windows 11. We encourage users to please report any installation issues on the Github Issues page, and we are more than happy to help!
- Download and install R: https://ftp.osuosl.org/pub/cran/
- Download, install, and open RStudio (Free version): https://www.rstudio.com/products/rstudio/download/
- If re-installing, remove any previous versions of pspecter remove.packages("pspecterlib")
- Clone/download IsoForma-paper repository
If you use IsoForma or any portions of this code please cite: Degnan et al. "IsoForma: An R Package for Quantifying and Visualizing Positional Isomers in Top-Down LC-MS/MS Data". Submitted to Journal of Proteome Research.
For a list of acceptable modifications, see the "Modification" column of Glossary. If there is a modification needed that is not in this list, please report the modification to our issues page.