Releases: ENCODE-DCC/encoded
Releases · ENCODE-DCC/encoded
v132.0
update-version-v132.0 (#4418) ENCM-193 restore audit inherit (#4419) ENCM-189-series-crash (#4417) ENCM-184-agg-series-summary-assay (#4412) ENCM-186-topic-modeling-enums (#4414) ENCM-182-ann-type-enum (#4411) ENCM-170 (#4413) ENCM-176-long-target-facet (#4406) ENCM-152-publication-regex (#4410) ENCM-175-annotation-analysis-audit (#4404) ENCM-180-missing-cart-files (#4408) ENCM-188-stem-cell (#4415) ENCM-168 Change order of Rush brain matrix tables (#4407) ENCM-173-embryonic-fetal (#4405) ENCM-167-aggregate-series-files (#4409)
v131.0
ENCM-144-rush-ad-cogdx (#4400) ENCM-171 Increase listen-backlog (#4399) ENCM-160-snrna-seq-assay-title (#4394) ENCM-164-output-type-genic-features (#4398) ENCM-165-fix-missing-files (#4397) ENCM-156 Add cCRE and Segway legends to Valis (#4395) ENCM-141 add mouse body map to summary page (#4389) ENCM-162-valis-memory (#4396) ENCM-158-annotation-treatment (#4393) ENCM-153-display-disease-annotation (#4392) ENCM-148-annotation-type-pseudobulk (#4391) ENCM-140-bpnet-normalized (#4388)
v130.0
1. ENCM-139-entex-link (#4382) 2. ENCM-138-cart-facet-count (#4385) 3. ENCM-137-undo-italicized-brackets (#4381) 4. ENCM-136 update snovault 1.0.68 (#4380) 5. ENCM-132-bpnet-output-types (#4377) 6. ENCM-131-encyclopedia-tags (#4374) 7. ENCM-133-remove-walkme (#4378) 8. ENCM-126-update-ccre-v4-agnostic (#4376) 9. ENCM-92-organoid-search-links (#4375) 10. ENCM-127-add-bpnet-model (#4368) 11. ENCM-129-add-output-type (#4370) 12. ENCM-90 stem cell (#4372) 13. ENCM-130-reg-internal-tag (#4371) 14. ENCM-115 Add FCC matrix (#4364) 15. ENCM-116 add disease series tab (#4367) 16. ENCM-125 add google analytics 4 (#4365) 17. ENCM-88 fix crispr screens browser locations (#4361) 18. ENCM-128-matrix-brain-term (#4366) 19. ENCM-124 add seqFISH to Pipelines (#4362) 20. ENCM-114 mixed genome annotation crashes (#4357) 21. ENCM-119 fix organism dev error (#4355)
v129.0
1. ENCM-100 update snovault 1.0.66 (#4338) 2. ENCM-97-file-output-type-update (#4337) 3. ENCM-84 Make a matrix for Degron experiments (#4335) 4. ENCM-96-aggregate-series-related-dataset (#4334) 5. ENCM-81 Enhance Multiomics Series Search Results (#4336) 6. ENCM-95-exclude-series-audit (#4333) 7. ENCM-91-megamap-graph (#4332) 8. ENCM-93 update ontology file (#4331) 9. ENCM-87-annotation-output-type (#4328) 10. ENCM-89-support-big-image-attachments (#4329) 11. ENCM-85-add-degron-internal-tag (#4325) 12. ENCM-83 Improve the mouse development series page (#4327) 13. ENCM-82-hic-assay-title-fix (#4323) 14. ENCM-35-series-summary (#4322) 15. ENCM-80-support-v40-biginteract (#4321) 16. ENCM-78-add-rfa-facet-human-donor (#4319) 17. ENCM-79-facet-count (#4318) 18. ENCM-77-cell-type-annotations (#4316) 19. ENCM-27-show-only-released (#4315) 20. ENCM-73-add-azure-url-to-metadata-tsv (#4313) 21. ENCM-75-gevent-error (#4314) 22. ENCM-72-fix-adding-to-cart (#4312)
128.0 (released) snovault 1.0.65
-------------------------------- 1. update snovault 1.0.64 (#4300) 2. ENCM-60-introduce-genotyping (#4299) 3. ENCM-61-add-encyclopedia-versions (#4298) 4. ENCM-55 Updates for BPnet (#4293) 5. ENCM-62 Update home page card links (#4296) 6. ENCM-56-terms-for-e-g-mpra (#4295) 7. ENCM-58-sc-atac-qc-metrics-definitions (#4291) 8. ENCM-57-post-differentiation-time-audit (#4294) 9. ENCM-52-long-read-output-types (#4289) 10. ENCM-59-bpnet-qc-object (#4292) 11. ENCM-53-atac-chip-qc (#4286) 12. ENCM-44-spatial-transcript-and-immune-ont-update (#4288) 13. ENCM-54-pin-splinter (#4287) 14. ENCM-50-chip-modern-audits (#4285) 15. ENCM-38 ChIA QC (#4281) 16. ENCM-43 supersedes donor (#4284) 17. ENCM-41-annotation-updates (#4278) 18. ENCM-36-update-HiC-QC (#4276) 19. ENCM-34 Updated GM reagent ID RegEx (#4280) 20. ENCM-40-dont-transform-limit-all (#4273) 21. ENCM-42-reference-exp-input (#4277) 22. ENCM-47 Descriptions added to DNase QC (#4279) 23. ENCM-37-rna-qc-update (#4283) 24. ENCM-32 fix thymus thyroid mix-up (#4272) 25. ENCM-25 add human body map to single cell (#4268) 26. ENCM-39 replace view all links (#4275) 27. ENCM-45-npm-timeout (#4274) 28. ENCM-29-pin-antlr (#4271) 29. ENCM-26 update default encyc tracks (#4264) 30. ENCM-23-broken-annotation-ucsc-browser-stuff (#4262) 31. update snovault 1.0.65 (#4306) 32. ENCM-51-hic-audits (#4305) 33. ENCM-65 indexing quality metrics (#4304) 34. ENCM-63-hic-assay-title (#4301) 35. ENCM-30-update-dsQTLs-to-caQTLs (#4302) 36. ENCM-64 aliases (#4303) 37. ENCM-71-cl-owl (#4310) 38. ENCM-70-body-button (#4308) 39. ENCM-68-body-margin (#4309) 40. ENCM-67-limiter-margin (#4307)
v127.0
v126.0
1. ENCD-6261 nolookups to jvm options (#4223) 2. ENCD-6266-add-immune-cells-and-human-donors-to-home-page (#4231) 3. ENCD-6260-output-type-functional-conservation-mapping (#4225) 4. ENCD-6263 Add slim for Ribo-seq (#4227) 5. ENCD-6265-add-BruLibraryQualityMetric-object (#4229) 6. ENCD-6104-series-table (#4226) 7. ENCD-6070-human-donor-matrix (#4167) 8. ENCD-6213-redesigned-home-page (#4220) 9. ENCD-6248 qc for sc rna processing (#4207) 10. ENCD-6235-adjust-fcs-table (#4202) 11. ENCD-6249 ukbb (#4214) 12. ENCD-6234-add-description-fcs-search (#4199) 13. ENCD-6255-culture-date-audit (#4216) 14. ENCD-6239 segway QC (#4222) 15. ENCD-6253-more-immune-slims (#4215) 16. ENCD-5946 immune cells rebased (#4211) 17. ENCD-6228 gene dependency update (#4209) 18. ENCD-6256-scatac (#4213) 19. ENCD-6258 add -Dlog4j2.formatMsgNoLookups=true to jvm.options (#4219) 20. ENCD-6211 add-inclusion-list-reference-property-to-library (#4210) 21. ENCD-6229 fix unnamed Valis tracks (#4217) 22. ENCD-6251 add aliases for charles-lee namespace (#4208) 23. ENCD-6242 For AWS_* env vars use None instead of 'default' (#4192) 24. ENCD-6245 add user (#4193) 25. ENCD-6233-experiment-sex-facet (#4198) 26. ENCD-6152-cart-current (#4191) 27. ENCD-6240 antibody page not rendering (#4197) 28. ENCD-6237-fix-search-title-biosample-summary (#4200)
encodeD Release v125.0
1. ENCD-6252-circleci-js-memory (#4205) 2. ENCD-6250 audit readout (#4201) 3. ENCD-6247 adding control back (#4196) 4. ENCD-6246-add-missing-slims (#4195) 5. ENCD-6244 CRISPR Method Dependency (#4194) 6. ENCD-6227-immune-slims (#4188) 7. ENDC-6230 FCC calculated properties (#4178) 8. ENCD-5890-adjust-pulse-chase-time-series-page (#4189) 9. ENCD-6216-gm-updates (#4180) 10. ENCD-6088-Series-type-and-expression-property-for-sorted-ATAC-datasets (#4185) 11. ENCD-6225 valis track not refreshed (#4181) 12. ENCD-6232 assay title (#4186) 13. ENCD-6114 new assay slims (#4179) 14. ENCD-6191-listed-carts (#4184) 15. ENCD-6210-point-to-new-rnaget-endpoints (#4183) 16. ENCD-5821-genome-browser-mislabels-hg19 (#4166) 17. ENCD-6222-gkm-outputs (#4182) 18. ENCD-6226-remove-git-protocol (#4176)
v124.0
1. ENCD-6224-fix-hicqualitymetric-dependencies (#4174) 2. ENCD-6218 Add facets and facet groups to donor (#4170) 3. REVERT ENCD-6179 (#4172) 4. ENCD-6223 pin responses to 0.14.0 (#4173) 5. ENCD-6217-report-list-crash (#4169) 6. ENCD-6220-deeply-profile-missing-facets (#4171) 7. update-snovault-1.0.62 (#4165) 8. ENCD-6209-updating-FCS-assay-title (#4164) 9. SNO-217-register-search-config-pieces-from-item (#4160) 10. ENCD-6208 remove control (#4161) 11. ENCD-6179-fcc-menu (#4157) 12. ENCD-6183-hic-scatac-qc (#4149) 13. ENCD-6197-devcontainer (#4137) 14 ENCD-6207-remove-columns-from-dataset-schema (#4156) 15. ENCD-6202-add-enums-for-restriction-enzymes (#4153) 16. ENCD-6205-fix-browser-track-in-region-search (#4152) 17. ENCD-6192-cart-schema-updates (#4135) 18. ENCD-6196-examined-loci-dependency-include-readout (#4154) 19. ENCD-6206-appended-exists-facet (#4155) 20. ENCD-6178-library-property-updates-Yu-lab (#4146) 21. ENCD-6117-cell-line-matrix (#4133) 22. ENCD-6182-scrna-output-types (#4145) 23. ENCD-6187 fix legend for ccres (#4151) 24. ENCD-4287 update d3 (#4144) 25. ENCD-6201-add-purpose-treatment-UI (#4147) 26. ENCD-6145-more-facet-headers (#4129) 27. ENCD-6194-relax-unreplicated-audit-on-long-read-scRNA-seq (#4150) 28. SNO-214-upgrade-node-to-version-12-for-circleci-tests (#4136) 29. ENCD-6175-support-collection-series-and-transgenic-enhancer-experiments-in-cart (#4138) 30. SNO-210-read-columns-from-configs (#4114) 31. ENCD-6199-fixed-deep-biosample-crash (#4141) 32. ENCD-6131-update-donor-ethnicity-enum (#4143) 33. SNO-212-support-gzip-attachment (#4126) 34. ENCD-6195 Add datapoint to Transgenic Enhancer Experiment (#4139) 35. ENCD-6168-update-fc-series-search-title (#4142) 36. ENCD-6189-add-experimental-input-UI (#4140) 37. ENCD-5893-cart-reclassify-non-raw-files-without-assembly-as-processed (#4074) 38. ENCD-6157-allow-multiple-types-for-report-view-button (#4122) 39. ENCD-6138-fix-mixed-title-not-appearing (#4088) 40. ENCD-5869-add-missing-control_type-in-url (#4124) 41. ENCD-6190-html-editor-crash (#4128)
Release for encodeD v123x0
v123.0 1. ENCD-6180-matrix-search (#4123) 2. ENCD-6181-move-warning-facet-to-quality-group (#4125) 3. ENCD-6142-biosample-summary-updates (#4105) 4. ENCD-6035 add body map (#4093) 5. ENCD-6160-snatac (#4120) 6. ENCD-6169 gkm-SVM-model (#4118) 7. ENCD-6148 exclude fcc datapoints (#4117) 8. ENCD-6154-collection-series (#4111) 9. ENCD-6159-updates-to-reference-data-table (#4096) 10. ENCD-6097-allow-series-and-related-datasets-in-cart (#4119) 11. ENCD-6173-circle-node-install-fix (#4121) 12. ENCD-6143-upgrade-encyclopedia-version-enums (#4102) 13. ENCD-6166-Filtering out unnecessary Region Search fields (#4113) 14. ENCD-6141-update-fc-title-search (#4115) 15. ENCD-6134-add-elements-selection-method-enums (#4109) 16. ENCD-6093-facets-appear-in-groups-on-certain-search-result-pages (#4104) 17. ENCD-6144 tracks batch (#4106) 18. ENCD-6150 Removing both lifestage and run_type from facets (#4110) 19. ENCD-6162-fix-single-cell-unit-schema-link (#4103) 20. ENCD-6158-treatment-details-add-purpose-enum (#4108) 21. ENCD-5758-cart-rep-facet (#4079) 22. ENCD-6149-add-hic-file-output-types (#4097)