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Add public `Config.update_from_dirs()` method (#2538) #1728

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Run time

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Job	Run time
Linux Python 3.10	2m 36s
OSX Python 3.10	6m 4s
Linux Python 3.11	2m 28s
OSX Python 3.11	6m 34s
Linux Python 3.12	2m 30s
OSX Python 3.12	5m 32s
	25m 44s