silenced warnings

docs/source/conf.py

@@ -78,7 +78,12 @@
     "undoc-members": False,
     "exclude-members": "__weakref__",
 }
-
+suppress_warnings = [
+    'docstring',
+    'ref.citation',       # Example: Suppress warnings about citations
+    'image.nonlocal_uri', # Example: Suppress warnings about non-local images
+    # Add other warnings to suppress as needed
+]
 # Add any paths that contain templates here, relative to this directory.
 templates_path = ["_templates"]
 

src/python/ensembl/tools/anno/transcriptomic_annotation/star.py

@@ -12,11 +12,10 @@
 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 # See the License for the specific language governing permissions and
 # limitations under the License.
-"""
-    The STAR (Spliced Transcripts Alignment to a Reference) alignment tool is widely used
-    in genomics research for aligning RNA-seq data to a reference genome.
-    Dobin A, Davis CA, Schlesinger F, et al. STAR: ultrafast universal RNA-seq aligner.
-    Bioinformatics. 2013;29(1):15-21. doi:10.1093/bioinformatics/bts635
+"""The STAR (Spliced Transcripts Alignment to a Reference) alignment tool is widely used
+in genomics research for aligning RNA-seq data to a reference genome.
+Dobin A, Davis CA, Schlesinger F, et al. STAR: ultrafast universal RNA-seq aligner.
+Bioinformatics. 2013;29(1):15-21. doi:10.1093/bioinformatics/bts635
 """
 __all__ = ["run_star", "subsample_transcriptomic_data", "run_trimming"]