tissue name lower

Ensembl · Aug 12, 2024 · 0c44b94 · 0c44b94
1 parent 8b55ff9
commit 0c44b94
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/pipelines/nextflow/workflows/bin/get_metadata.py b/pipelines/nextflow/workflows/bin/get_metadata.py
@@ -121,8 +121,8 @@ def json_parse(response: str, fields: list):
             "tissue": "; ".join(
                 value
                 for value in [
-                    re.sub(r"[!\"#$%&()*\+,\-\'.\/:;<=>?@\[\]^`{|}~]", "", output_data["tissue_type"]),
-                    re.sub(r"[!\"#$%&()*\+,\-\'.\/:;<=>?@\[\]^`{|}~]", "", output_data["tissue_lib"]),
+                    re.sub(r"[!\"#$%&()*\+,\-\'.\/:;<=>?@\[\]^`{|}~]", "", output_data["tissue_type"]).lower(),
+                    re.sub(r"[!\"#$%&()*\+,\-\'.\/:;<=>?@\[\]^`{|}~]", "", output_data["tissue_lib"]).lower(),
                 ]
                 if value != ""
             ).rstrip("; "),