removed ftp url

Ensembl · Aug 15, 2024 · 2434b2c · 2434b2c
1 parent 3166828
commit 2434b2c
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/pipelines/nextflow/modules/star_alignment/download_paired_fastqs.nf b/pipelines/nextflow/modules/star_alignment/download_paired_fastqs.nf
@@ -56,11 +56,11 @@ process DOWNLOAD_PAIRED_FASTQS {
 
             while (!md5Match && retryCount < maxRetries) {
                 """
-                wget -qq -c -O ${pair1Path} ftp://${url1}
+                wget -qq -c -O ${pair1Path} ${url1}
                 """.execute().waitFor()
 
                 """
-                wget -qq -c -O ${pair2Path} ftp://${url2}
+                wget -qq -c -O ${pair2Path} ${url2}
                 """.execute().waitFor()
 
                 // Calculate MD5 checksums of downloaded files