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Update compare fasta files#461

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Dishalodha wants to merge 25 commits intomainEnsembl/ensembl-genomio:mainfrom disha/update_compareEnsembl/ensembl-genomio:disha/update_compareCopy head branch name to clipboard

+577-460

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Commits on Dec 18, 2024

• seperate seq_region comp and fasta

  Dishalodha

  committed
  b470376

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• clean the file

  Dishalodha

  committed
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• call the class properly and add args

  Dishalodha

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  afbbf27

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• output a report

  Dishalodha

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  43f9350

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• add common and only1,only2 to report

  Dishalodha

  committed
  0bc7e9e

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• add docs

  Dishalodha

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  b6241db

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Commits on Dec 19, 2024

• updated the logic for check_N and find common

  Dishalodha

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• add docstrings

  Dishalodha

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  5a2975c

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• used black,mypy and moved file to io

  Dishalodha

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  e01e554

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• convert into a module

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Commits on Dec 23, 2024

• add license

  Dishalodha

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Commits on Dec 24, 2024

• create test for build_seq_dict

  Dishalodha

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Commits on Jan 6, 2025

• creating test for compare_seq_N

  Dishalodha

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Commits on Jan 9, 2025

• add test for test_compare

  Dishalodha

  committed
  19d0f94

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• add test for read fasta

  Dishalodha

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  608d6a6

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• add test for test_write_results

  Dishalodha

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  4be7174

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• add test for test_parse_args

  Dishalodha

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  ff5de2d

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• run black and mypy

  Dishalodha

  committed
  324fbe3

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• update seqgroup

  Dishalodha

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  269e140

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• remove compare_fasta from runnable

  Dishalodha

  committed
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Commits on Jan 27, 2025

• Apply suggestions from lahcens code review

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  Dishalodha

  and

  ens-LCampbell

  authored
  0f0b2a7

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• change fasta arg names

  Dishalodha

  committed
  3d66dcb

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Commits on Jan 29, 2025

• make the comp list unique

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  Dishalodha

  and

  ens-LCampbell

  authored
  8ba1d56

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• correct pylint for compare.py

  Dishalodha

  committed
  6b02c9b

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Commits on Feb 4, 2025

• run black and correct pylint

  Dishalodha

  committed
  0182780

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