Add prints for info

Ensembl · Oct 16, 2024 · d4d1957 · d4d1957
1 parent 99471dc
commit d4d1957
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diff --git a/nextflow/modules/db_cleanup/cleanup_tmp_db.nf b/nextflow/modules/db_cleanup/cleanup_tmp_db.nf
@@ -21,7 +21,12 @@ process CLEANUP_TMP_DB {
     path compressed_file
     tuple val(job_id), val(db_name)
 
+    output:
+    tuple val(job_id), val(db_name), emit: cleaned_up
+
     script:
+    println "Cleaning up temporary db: ${db_name}_tmp"
+
     """
     tmp_db_name="${db_name}_tmp"
     echo "Attempting to drop database \${tmp_db_name} if it exists..."

diff --git a/nextflow/modules/db_cleanup/monitor_db_copy.nf b/nextflow/modules/db_cleanup/monitor_db_copy.nf
@@ -25,6 +25,8 @@ process MONITOR_DB_COPY {
     tuple val(job_id), val(db_name), emit: monitored_job
 
     script:
+    println "Monitoring job id: ${job_id}"
+
     """
     # Define the API endpoint to check the status of the job
     api_url="https://services.ensembl-production.ebi.ac.uk/api/dbcopy/requestjob/${job_id}"