{
  "language": "perl",
  "os": [
    "linux"
  ],
  "dist": "xenial",
  "perl": [
    "5.14",
    "5.26.2"
  ],
  "services": [
    "mysql"
  ],
  "env": [
    "jobs={:COVERALLS=>\"true\", :DB=>\"mysql\"}"
  ],
  "addons": {
    "apt": {
      "update": true,
      "packages": [
        "unzip",
        "sendmail",
        "graphviz",
        "emboss"
      ]
    }
  },
  "before_install": [
    "git clone --depth 1 https://github.com/Ensembl/ensembl-git-tools.git",
    "export PATH=$PATH:$PWD/ensembl-git-tools/bin",
    "export ENSEMBL_BRANCH=master",
    "export SECONDARY_BRANCH=main",
    "echo \"TRAVIS_BRANCH=$TRAVIS_BRANCH\"",
    "if [[ $TRAVIS_BRANCH =~ ^release\\/[0-9]+$ ]]; then export ENSEMBL_BRANCH=$TRAVIS_BRANCH; export SECONDARY_BRANCH=$TRAVIS_BRANCH; fi",
    "echo \"ENSEMBL_BRANCH=$ENSEMBL_BRANCH\"",
    "echo \"SECONDARY_BRANCH=$SECONDARY_BRANCH\"",
    "git-ensembl --clone --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH --depth 1 ensembl-test",
    "git-ensembl --clone --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH --depth 1 ensembl",
    "git-ensembl --clone --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH --depth 1 ensembl-compara",
    "git-ensembl --clone --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH --depth 1 ensembl-datacheck",
    "git-ensembl --clone --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH --depth 1 ensembl-variation",
    "git-ensembl --clone --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH --depth 1 ensembl-metadata",
    "git-ensembl --clone --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH --depth 1 ensembl-funcgen",
    "git-ensembl --clone --branch master --secondary_branch main --depth 1 ensembl-hive",
    "git-ensembl --clone --branch master --secondary_branch main --depth 1 ensembl-orm",
    "git-ensembl --clone --branch master --secondary_branch main --depth 1 ensembl-taxonomy",
    "git clone --branch 1.9 --depth 1 https://github.com/samtools/htslib.git",
    "git clone --branch release-1-6-924 --depth 1 https://github.com/bioperl/bioperl-live.git",
    "cd htslib",
    "make",
    "export HTSLIB_DIR=$(pwd -P)",
    "cd .."
  ],
  "install": [
    "cpanm --sudo -v --installdeps --with-recommends --notest --cpanfile ensembl/cpanfile .",
    "cpanm --sudo -v --installdeps --notest --cpanfile ensembl-hive/cpanfile .",
    "cpanm --sudo -v --installdeps --notest --cpanfile ensembl-datacheck/cpanfile .",
    "export PERL5LIB=$PERL5LIB:$PWD/bioperl-live",
    "cpanm --sudo -v --installdeps --notest .",
    "cpanm --sudo -n Devel::Cover::Report::Coveralls",
    "cp travisci/MultiTestDB.conf.travisci  modules/t/MultiTestDB.conf",
    "mysql -u root -h localhost -e 'GRANT ALL PRIVILEGES ON *.* TO \"travis\"@\"%\"'"
  ],
  "script": [
    "./travisci/harness.sh"
  ],
  "jobs": {
    "include": [
      {
        "language": "python",
        "python": "3.8",
        "install": [
          "pip install -e .",
          "pip install -r requirements-test.txt"
        ],
        "script": [
          "pytest src/python/test"
        ]
      }
    ]
  },
  "notifications": {
    "email": [
      {
        "on_success": "always",
        "on_failure": "always"
      }
    ],
    "slack": [
      {
        "rooms": [
          {
            "secure": "BkrSPAkOM5aTOpeyO9vZnHdZ0LF1PLk0r2HtcXN2eTMyiHoGXkl6VUjdAL8EkzI4gunW2GProdSIjHpf60WdiEmKAulMdJRI+xyUbuxnY31mwiikS9HYwqmPBbMTf0Mh2pMBngZRFs+gaFZDUMTfLfp+8MQfU1R54yb6hPuVt5I="
          }
        ]
      }
    ]
  }
}