{
  "language": "perl",
  "os": [
    "linux"
  ],
  "dist": "focal",
  "services": [
    "mysql"
  ],
  "perl": [
    "5.26",
    "5.30"
  ],
  "addons": {
    "apt": {
      "packages": [
        "unzip"
      ]
    }
  },
  "env": [
    "jobs={:COVERALLS=>\"true\", :COVERALLS_REPO_TOKEN=>\"${{secret.COVERALLS_REPO_TOKEN}}\"}={:COVERALLS=>\"false\"}"
  ],
  "before_install": [
    "git clone --depth 1 https://github.com/Ensembl/ensembl-git-tools.git",
    "export PATH=$PWD/ensembl-git-tools/bin:$PATH",
    "export ENSEMBL_BRANCH='main'",
    "export SECONDARY_BRANCH='main'",
    "echo \"TRAVIS_BRANCH=$TRAVIS_BRANCH\"",
    "if [[ $TRAVIS_BRANCH =~ ^release\\/[0-9]+$ ]]; then export ENSEMBL_BRANCH=$TRAVIS_BRANCH; fi",
    "echo \"ENSEMBL_BRANCH=$ENSEMBL_BRANCH\"",
    "git-ensembl --clone --depth 1 --branch $ENSEMBL_BRANCH ensembl-test",
    "git-ensembl --clone --depth 1 --branch $ENSEMBL_BRANCH ensembl",
    "git-ensembl --clone --depth 1 --branch $ENSEMBL_BRANCH ensembl-compara",
    "git-ensembl --clone --depth 1 --branch $ENSEMBL_BRANCH ensembl-variation",
    "git-ensembl --clone --depth 1 --branch $ENSEMBL_BRANCH --secondary_branch $SECONDARY_BRANCH ensembl-vep",
    "git-ensembl --clone --depth 1 --branch $ENSEMBL_BRANCH ensembl-funcgen",
    "git-ensembl --clone --depth 1 --branch $ENSEMBL_BRANCH ensembl-io",
    "git clone -b release-1-6-924 --depth 1 https://github.com/bioperl/bioperl-live.git",
    "git clone --branch 1.13 --depth 1 https://github.com/samtools/htslib.git",
    "cd htslib",
    "git submodule update --init --recursive",
    "make",
    "export HTSLIB_DIR=$(pwd -P)",
    "cd ..",
    "cd ensembl-variation/C_code/",
    "make",
    "cd ../../"
  ],
  "install": [
    "export PERL5LIB=$PERL5LIB:$PWD/bioperl-live",
    "cpanm -v --sudo --installdeps --with-recommends --notest --cpanfile ensembl/cpanfile .",
    "cpanm -v --sudo --installdeps --with-recommends --notest .",
    "cpanm -n --sudo Devel::Cover::Report::Coveralls JSON",
    "cp travisci/MultiTestDB.conf.travisci t/MultiTestDB.conf",
    "mysql -u root -h localhost -e 'GRANT ALL PRIVILEGES ON *.* TO \"travis\"@\"%\"'",
    "mysql -u root -h localhost -e 'SET GLOBAL local_infile=1'"
  ],
  "script": [
    "./travisci/harness.sh"
  ],
  "notifications": {
    "email": [
      {
        "on_failure": "change"
      }
    ],
    "slack": [
      {
        "rooms": [
          {
            "secure": "Bewsi8hvW4hJ5tNrPkfS9MWFRoADQHclDdTVB7pd0A0cAGUcysbLR3yzmytfyrOtUKkasL+fKut0p2xS8LnkZU5WsFsDcMTwEjoqUTe2pTna7093Re+aK+H7c8sTb/HzDjGhupIuR4om6vGbV5mBzXKfBjE+8r8ot/kFpl/ZE6k="
          }
        ],
        "on_failure": "change"
      }
    ]
  },
  "jobs": {
    "exclude": [
      {
        "perl": "5.26",
        "env": [
          {
            "COVERALLS": "false"
          }
        ]
      },
      {
        "perl": "5.30",
        "env": [
          {
            "COVERALLS": "true",
            "COVERALLS_REPO_TOKEN": "${{secret.COVERALLS_REPO_TOKEN}}"
          }
        ]
      }
    ]
  }
}