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Replace csv with a DB query to run the script for a list of genome_id s. #35

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Mehrnaz-Charkhchi
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Description

This PR is only to test a required update on submit_track_templates.py to use direct DB queries instead of using CSV so we can add it to the NF pipeline.
./submit_track_templates.py -g ba6cb6fc-a2b5-4e9c-a030-4d95b053de3a 33240563-7345-487f-931d-a125bce20fce

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Example(s)

./submit_track_templates.py --dry-run -g ba6cb6fc-a2b5-4e9c-a030-4d95b053de3a 33240563-7345-487f-931d-a125bce20fce

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Checklist

  • Black formatting
  • Tests

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@veidenberg
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veidenberg commented Mar 25, 2025

DB queries integration implemented as part of #34

@veidenberg veidenberg closed this Mar 25, 2025
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2 participants