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@ErasmusMC-Bioinformatics

Erasmus Medical Center

Bioinformatics Department

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  1. WeFaceNano WeFaceNano Public

    Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).

    Python 12 1

  2. galaxytools-emc galaxytools-emc Public

    Tool Shed repositories maintained and developed by the Erasmus University Medical Center, following best practices guidelines set out by the Intergalactic Utilities Commission https://wiki.galaxypr…

    Python 3 1

  3. fuma fuma Public

    Forked from yhoogstrate/fuma

    💨🐆 Fusion Matcher: Match predicted fusions according to chromosomal location or gene annotation(s)

    Python 2 3

  4. galaxy-mothur-toolset galaxy-mothur-toolset Public

    All information pertaining to the Galaxy Mothur Toolkit (GMT) project

    Python 2 2

  5. Virtual-Normal-Correction Virtual-Normal-Correction Public

    Forked from shiltemann/Virtual-Normal-Correction

    Shell 1

  6. galaxy-courses galaxy-courses Public

    Galaxy course documents and templates

    TeX 1 1

Repositories

Showing 10 of 64 repositories
  • BenchAMRking-scripts Public

    Code for figures

    ErasmusMC-Bioinformatics/BenchAMRking-scripts’s past year of commit activity
    Python 0 0 0 0 Updated Jun 28, 2024
  • two-step-TL Public
    ErasmusMC-Bioinformatics/two-step-TL’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 24, 2024
  • reconCNV Public Forked from rghu/reconCNV

    visualize CNV data from targeted capture based sequencing data

    ErasmusMC-Bioinformatics/reconCNV’s past year of commit activity
    Python 0 GPL-3.0 7 0 0 Updated Jun 14, 2024
  • molclass Public

    Moleculair classification tool, search for a variant and get results from many sources

    ErasmusMC-Bioinformatics/molclass’s past year of commit activity
    Python 0 0 0 0 Updated Jun 7, 2024
  • EMC-Neoantigen Public Forked from icbi-lab/nextNEOpi

    nextNEOpi: a comprehensive pipeline for computational neoantigen prediction

    ErasmusMC-Bioinformatics/EMC-Neoantigen’s past year of commit activity
    Nextflow 0 24 0 0 Updated Jun 3, 2024
  • benchAMRking Public
    ErasmusMC-Bioinformatics/benchAMRking’s past year of commit activity
    SCSS 1 CC0-1.0 0 0 0 Updated Apr 29, 2024
  • infrastructure Public
    ErasmusMC-Bioinformatics/infrastructure’s past year of commit activity
    Jinja 0 1 1 0 Updated Feb 27, 2024
  • shm_csr Public

    Somatic hypermutation and class switch recombination pipeline

    ErasmusMC-Bioinformatics/shm_csr’s past year of commit activity
    R 1 MIT 2 0 0 Updated Jan 10, 2024
  • SigMA Public Forked from parklab/SigMA

    Mutational signature analysis for low statistics SNV data

    ErasmusMC-Bioinformatics/SigMA’s past year of commit activity
    R 0 21 0 0 Updated Nov 29, 2023
  • transferlearningproject Public
    ErasmusMC-Bioinformatics/transferlearningproject’s past year of commit activity
    Python 0 0 0 0 Updated Oct 9, 2023
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