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Apm app#544

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mkuehbach wants to merge 23 commits intomasterFAIRmat-NFDI/pynxtools:masterfrom apm_appFAIRmat-NFDI/pynxtools:apm_appCopy head branch name to clipboard

Commits

Commits on Jan 10, 2025

• use pynxtools.nomad.schema.Root

  sanbrock

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  36a121e

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Commits on Jan 17, 2025

• not using inner sections

  sanbrock

  committed
  c1bc7d5

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Commits on Jan 21, 2025

• fix for doc links if name contains _

  sanbrock

  committed
  fc5b95b

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• fix format

  sanbrock

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  bfce048

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• linting

  sanbrock

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  274e0d6

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• fixing tests

  sanbrock

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  27fa71c

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Commits on Jan 24, 2025

• fixing mime-type for WSL

  sanbrock

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  8fb4953

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• fix for handling raw files in subdirectories

  sanbrock

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  bd22578

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Commits on Jan 26, 2025

• Version tracking feature branch to enable usage of specifically customized NeXus definitions for the development of the atom probe app in NOMAD

  atomprobe-tc

  committed
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• Updated definitions and modifications on pyproject to prevent the uncontrolled side effect that urllib3 gets updated which generates incompatibilities with elasticsearch on the nomad side

  atomprobe-tc

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• Moved deps urllib3 and filelock to a nomad set of deps such that these get not modified when installing pynxtools in a current nomad environment, tested with 029fb04d239203cff90e4e

  atomprobe-tc

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Commits on Jan 27, 2025

• NXapm updates

  atomprobe-tc

  committed
  018f834

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• Bumping ruff to 0.9.3

  atomprobe-tc

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Commits on Jan 28, 2025

• Edits in reply to how cameca example get parsed in NOMAD

  atomprobe-tc

  committed
  8a213a4

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• edit defs

  atomprobe-tc

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  f8b341e

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• Updated defs

  atomprobe-tc

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Commits on Jan 30, 2025

• Updated defs for event records

  atomprobe-tc

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  9ab43ba

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• updated defs, instrument type

  atomprobe-tc

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• Added an example based on @GinzburgLev and @sanbrock how to debug the pynxtools nomad parser plugin for a nomad parse command line session with some file

  atomprobe-tc

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Commits on Jan 31, 2025

• Using the refactored NXapm that might break current pynxtools-apm parser

  atomprobe-tc

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Commits on Feb 1, 2025

• Fixes of NOMAD APM example

  atomprobe-tc

  committed
  77f9a9a

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• Map NX_POSINT and NX_UINT to m_int64

  atomprobe-tc

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  7b117d2

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• run_number a countable

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  2768771

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