Skip to content
@FrancisCrickInstitute

The Francis Crick Institute

Popular repositories Loading

  1. TRACERx-PHLEX TRACERx-PHLEX Public

    Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging

    Shell 15

  2. introduction-to-image-analysis introduction-to-image-analysis Public

    Forked from RMS-DAIM/introduction-to-image-analysis

    Jupyter Notebook 13 6

  3. lyra lyra Public archive

    Agentic primative repository

    Python 11 3

  4. Etch-a-Cell-Nuclear-Envelope Etch-a-Cell-Nuclear-Envelope Public

    Python 10 1

  5. Segment-Flow Segment-Flow Public

    Nextflow pipeline for deep learning segmentation models

    Python 9 4

  6. aiod_napari aiod_napari Public

    Python 8 2

Repositories

Showing 10 of 230 repositories
  • spatial-bio-training Public Forked from FrancisCrickInstitute/CellSurvey
    FrancisCrickInstitute/spatial-bio-training's past year of commit activity
    Jupyter Notebook 0 GPL-3.0 1 0 0 Updated Nov 15, 2026
  • Segment-Flow Public

    Nextflow pipeline for deep learning segmentation models

    FrancisCrickInstitute/Segment-Flow's past year of commit activity
    Python 9 MIT 4 2 7 Updated Nov 13, 2026
  • Data-Prospector Public

    AI pipeline that explores a dataset from many angles at once - including the ideas that turn out wrong

    FrancisCrickInstitute/Data-Prospector's past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Nov 13, 2026
  • DupCaller Public Forked from AlexandrovLab/DupCaller
    FrancisCrickInstitute/DupCaller's past year of commit activity
    Python 0 BSD-2-Clause 10 0 0 Updated Nov 12, 2026
  • AWX-Linux-Webservices-Deploy Public

    Git repository that contains webservices configurations

    FrancisCrickInstitute/AWX-Linux-Webservices-Deploy's past year of commit activity
    Jinja 0 0 0 0 Updated Nov 12, 2026
  • CLEM_image_analysis_workshop Public
    FrancisCrickInstitute/CLEM_image_analysis_workshop's past year of commit activity
    1 CC-BY-SA-4.0 1 0 1 Updated Nov 11, 2026
  • aiod_napari Public
    FrancisCrickInstitute/aiod_napari's past year of commit activity
    Python 8 MIT 2 4 4 Updated Nov 11, 2026
  • CellSurvey Public

    GPU-accelerated Python pipeline for image-based spatial omics, built on Sopa and SpatialData

    FrancisCrickInstitute/CellSurvey's past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Nov 11, 2026
  • pMANIC Public

    Desktop application for GC-MS isotopologue analysis with natural isotope abundance correction. Python, PySide6.

    FrancisCrickInstitute/pMANIC's past year of commit activity
    Python 1 GPL-3.0 1 20 2 Updated Nov 10, 2026
  • flag-qc Public
    FrancisCrickInstitute/flag-qc's past year of commit activity
    Jupyter Notebook 3 GPL-3.0 0 0 0 Updated Nov 10, 2026
View all repositories