Skip to content

Issues: GenSpectrum/LAPIS-SILO

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

84 Open 183 Closed
84 Open 183 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Move preprocessor directory tests to unit tests
#623 opened Oct 24, 2024 by Taepper
Implement lock for currently loaded directories
#612 opened Oct 14, 2024 by Taepper
2
panic tests should use EXPECT_THAT.. ThrowsMessage
#611 opened Oct 14, 2024 by pflanze
Add version information to /sample/info endpoint
#604 opened Oct 7, 2024 by corneliusroemer
2
Naming consistency: Filepath instead of Filename if it is a path
#600 opened Oct 2, 2024 by Taepper
Enable partition_by config value for columns that are not lineages enhancement New feature or request question Further information is requested
#597 opened Sep 25, 2024 by Taepper
Error on unknown Config values
#594 opened Sep 24, 2024 by Taepper SILO 1.0
@pflanze
1
Recombinant wildcard queries
#589 opened Sep 19, 2024 by Taepper
Validate aligned sequences length
#588 opened Sep 18, 2024 by Taepper
Validate primary key exists in metadata, is unique and every metadata primary key exists in sequences
#587 opened Sep 18, 2024 by Taepper
Validate that Pango lineages have their alias defined and error appropriately
#586 opened Sep 18, 2024 by Taepper
Validate data types of each metadata field
#585 opened Sep 18, 2024 by Taepper
Validate that primary keys in metadata are unique and error appropriately
#584 opened Sep 18, 2024 by Taepper
Validate proper lineage tree and error appropriately
#583 opened Sep 18, 2024 by Taepper
Deprecate detailed info endpoint
#582 opened Sep 18, 2024 by Taepper
Add endpoint to return database_config
#581 opened Sep 18, 2024 by Taepper
Run google's include-what-you-use
#578 opened Sep 17, 2024 by Taepper
More distribution options than docker image: binaries
#575 opened Sep 13, 2024 by corneliusroemer
2
Command Line Argument support for all configs is broken
#570 opened Sep 12, 2024 by Taepper SILO 1.0
@pflanze
Silo preprocessing should have verbosity argument that allows debug logging, e.g. showing exact file names used etc.
#565 opened Sep 11, 2024 by corneliusroemer
2
Remove tsv/fasta input format
#562 opened Sep 9, 2024 by Taepper
2
Speed of unit tests enhancement New feature or request
#560 opened Sep 9, 2024 by pflanze
Code review: Simplify unaligned sequence retrieval
#558 opened Sep 6, 2024 by anna-parker
Run LAPIS-SILO-e2e tests automatically
#557 opened Sep 5, 2024 by Taepper
Broken health-check
#556 opened Sep 5, 2024 by Taepper
2
ProTip! Adding no:label will show everything without a label.