Merge pull request #33 from GeneMAP-Research/dev

move workflow scripts to main project dir
GeneMAP-Research · Jun 13, 2024 · 2ff1d37 · 2ff1d37
2 parents 114e797 + 3a7b26f
commit 2ff1d37
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diff --git a/workflow/alignReadsToReference.nf → alignReadsToReference.nf b/workflow/alignReadsToReference.nf → alignReadsToReference.nf
diff --git a/workflow/annotateVarints.nf → annotateVarints.nf b/workflow/annotateVarints.nf → annotateVarints.nf
diff --git a/workflow/callVariants.nf → callVariants.nf b/workflow/callVariants.nf → callVariants.nf
diff --git a/workflow/callVariantsFromGenomicDBs.nf → callVariantsFromGenomicDBs.nf b/workflow/callVariantsFromGenomicDBs.nf → callVariantsFromGenomicDBs.nf
diff --git a/workflow/converBam2Cram.nf → converBam2Cram.nf b/workflow/converBam2Cram.nf → converBam2Cram.nf
diff --git a/workflow/converBam2Fastq.nf → converBam2Fastq.nf b/workflow/converBam2Fastq.nf → converBam2Fastq.nf
diff --git a/workflow/filterVariantCalls.nf → filterVariantCalls.nf b/workflow/filterVariantCalls.nf → filterVariantCalls.nf
diff --git a/workflow/genotypegvcf.nf → genotypegvcf.nf b/workflow/genotypegvcf.nf → genotypegvcf.nf
diff --git a/workflow/getQualityReports.nf → getQualityReports.nf b/workflow/getQualityReports.nf → getQualityReports.nf
diff --git a/workflow/importSamplesToGenomicDBs.nf → importSamplesToGenomicDBs.nf b/workflow/importSamplesToGenomicDBs.nf → importSamplesToGenomicDBs.nf
diff --git a/workflow/postAlignmentProcessing.nf → postAlignmentProcessing.nf b/workflow/postAlignmentProcessing.nf → postAlignmentProcessing.nf
diff --git a/workflow/test.nf → test.nf b/workflow/test.nf → test.nf
diff --git a/workflow/trimReads.nf → trimReads.nf b/workflow/trimReads.nf → trimReads.nf