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@GenomicsAotearoa

Genomics Aotearoa

See our GitHub pages (link below) for more information on our public repositories.

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  1. metagenomics_summer_school metagenomics_summer_school Public

    Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December

    HTML 51 28

  2. methods-and-musings methods-and-musings Public

    A (growing) collection of information contributed by Genomics Aotearoa members. Semi blog post style bites of content.

    9 6

  3. Kakapo Kakapo Public

    Scripts and code for Kākāpō genomic data

    Jupyter Notebook 14 1

Repositories

Showing 10 of 60 repositories
  • publicationQualityPlots_ggplot2 Public

    A short workshop that runs through building plots with ggplot2

    GenomicsAotearoa/publicationQualityPlots_ggplot2’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Jun 26, 2024
  • GenomicsAotearoa/Imputation-workshop’s past year of commit activity
    8 Apache-2.0 6 0 0 Updated Jun 22, 2024
  • GenomicsAotearoa/scRNA-seq-data-analysis’s past year of commit activity
    Dockerfile 2 GPL-3.0 2 0 0 Updated Jun 22, 2024
  • GenomicsAotearoa.github.io Public

    Code and files for Genomics Aotearoa github.io website

    GenomicsAotearoa/GenomicsAotearoa.github.io’s past year of commit activity
    1 2 0 0 Updated Jun 18, 2024
  • High-quality-genomes Public

    This repository aims to hosting workflows/codes that have been developed for GA high-quality-genome projects.

    GenomicsAotearoa/High-quality-genomes’s past year of commit activity
    Jupyter Notebook 6 9 0 1 Updated Jun 12, 2024
  • long-read-assembly-one-day Public Forked from otagobioinformaticsspringschool/long-read-assembly

    Long-read assembly workshop modified to run in a single day

    GenomicsAotearoa/long-read-assembly-one-day’s past year of commit activity
    HTML 0 GPL-3.0 5 0 0 Updated Jun 12, 2024
  • GenomicsAotearoa/introduction-to-nextflow’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Jun 4, 2024
  • RNA-seq-workshop-on-demand Public

    RNA-seq Data Analysis workshop, modified to run on the OnDemand training platform.

    GenomicsAotearoa/RNA-seq-workshop-on-demand’s past year of commit activity
    HTML 0 Apache-2.0 0 0 0 Updated May 21, 2024
  • environmental_metagenomics Public

    A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.

    GenomicsAotearoa/environmental_metagenomics’s past year of commit activity
    Python 10 6 0 0 Updated May 2, 2024
  • long-read-microbial-isolate-genomics Public

    Sequence processing workflow for samples obtained from microbial isolates sequenced using long-read technology.

    GenomicsAotearoa/long-read-microbial-isolate-genomics’s past year of commit activity
    0 0 0 0 Updated May 2, 2024

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