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close #986

@only1chunts only1chunts requested a review from mslarae13 June 18, 2025 13:09
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LinkML Linting Results

Summary

Count
Schemas Checked 1
Schemas with Error 1
Schemas with Warning 0
Total Errors 13
Total Warnings 0

Problems per Schema

/home/runner/work/mixs/mixs/src/mixs/schema/mixs.yaml

Errors

  • recommended: Subset 'combination_classes' does not have recommended slot 'description'
  • recommended: Subset 'sequencing' does not have recommended slot 'description'
  • recommended: Subset 'environment' does not have recommended slot 'description'
  • recommended: Subset 'nucleic acid sequence source' does not have recommended slot 'description'
  • recommended: Subset 'investigation' does not have recommended slot 'description'
  • standard_naming: Slot has name 'HACCP_term'
  • standard_naming: Slot has name 'IFSAC_category'
  • standard_naming: Slot has name 'air_PM_concen'
  • standard_naming: Slot has name 'ferm_pH'
  • standard_naming: Slot has name 'microb_start_taxID'
  • standard_naming: Slot has name 'soil_pH'
  • standard_naming: Slot has name 'spikein_AMR'
  • standard_naming: Slot has name 'water_pH'

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PR Preview Action v1.6.1

🚀 View preview at
https://GenomicsStandardsConsortium.github.io/mixs/pr-preview/pr-987/

Built to branch gh-pages at 2025-06-18 13:13 UTC.
Preview will be ready when the GitHub Pages deployment is complete.

@@ -10578,7 +10578,7 @@ slots:
annotations:
Preferred_unit: degree Celsius
description: 'Temperature at which a liquid becomes semi solid and loses its flow
characteristics. In crude oil a high pour point is generally associated with
characteristics. In crude oil a high pour point is generally associated with
a high paraffin content, typically found in crude deriving from a larger proportion
of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)'
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i think there's a specific LinkML slot for definition sources. Looking now.

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To do: can we move the wikipedia page link to the appropriate metaslot for this slot see_also

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see below

@@ -10578,7 +10578,7 @@ slots:
annotations:
Preferred_unit: degree Celsius
description: 'Temperature at which a liquid becomes semi solid and loses its flow
characteristics. In crude oil a high pour point is generally associated with
characteristics. In crude oil a high pour point is generally associated with
a high paraffin content, typically found in crude deriving from a larger proportion
of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)'
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Suggested change
of plant material. (soure: https://en.wikipedia.org/wiki/pour_point)'
of plant material.'
see_also:
- https://en.wikipedia.org/wiki/pour_point

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pour point: definition has a typo in "soure"
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