Fix notebook

GispoCoding · Dec 19, 2024 · 1bf85a9 · 1bf85a9
1 parent 3d56378
commit 1bf85a9
Showing 1 changed file with 22 additions and 11 deletions.
diff --git a/notebooks/testing_logratio_transformations.ipynb b/notebooks/testing_logratio_transformations.ipynb
@@ -88,7 +88,18 @@
    "metadata": {
     "tags": []
    },
-   "outputs": [],
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "/home/mika/code/EIS/eis_toolkit/notebooks/../eis_toolkit/utilities/aitchison_geometry.py:43: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '84.21052631578948' has dtype incompatible with int64, please explicitly cast to a compatible dtype first.\n",
+      "  dfc.iloc[idx] = _normalize(row, scale) if scale is not None else _normalize(row)\n",
+      "/home/mika/code/EIS/eis_toolkit/notebooks/../eis_toolkit/utilities/aitchison_geometry.py:43: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '15.789473684210527' has dtype incompatible with int64, please explicitly cast to a compatible dtype first.\n",
+      "  dfc.iloc[idx] = _normalize(row, scale) if scale is not None else _normalize(row)\n"
+     ]
+    }
+   ],
    "source": [
     "pair_a_b = single_pairwise_logratio(float(C.iloc[0, 0]), float(C.iloc[0, 1]))\n",
     "pair_a_c = single_pairwise_logratio(float(C.iloc[0, 0]), float(C.iloc[0, 2]))\n",
@@ -101,7 +112,7 @@
     "C_clr_inv = inverse_clr(C_clr, scale=100.0)\n",
     "C_alr_inv = inverse_alr(C_alr, \"c\", scale=100)\n",
     "\n",
-    "C_ilr_ab = single_ilr_transform(C, [\"a\"], [\"b\"])\n",
+    "C_ilr_ab = single_ilr_transform(C, [\"a\"], [\"b\"], scale=100)\n",
     "C_ilr_ab_c = single_ilr_transform(C, [\"a\", \"b\"], [\"c\"])"
    ]
   },
@@ -682,7 +693,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 19,
+   "execution_count": 18,
    "id": "81a98117-b981-47ea-a7bb-ba06c0dacb13",
    "metadata": {
     "tags": []
@@ -696,7 +707,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 20,
+   "execution_count": 19,
    "id": "c0204220-7bf2-4235-b92a-0e139180050e",
    "metadata": {
     "tags": []
@@ -710,7 +721,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 21,
+   "execution_count": 20,
    "id": "e1bda63b-ab9b-4060-90d5-7520952f2e3a",
    "metadata": {
     "tags": []
@@ -792,7 +803,7 @@
        "4     12500.0      3600.0     31500.0      8020.0"
       ]
      },
-     "execution_count": 21,
+     "execution_count": 20,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -807,7 +818,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 26,
+   "execution_count": 21,
    "id": "75728aa4-5b2e-46b6-9511-1250bf4b13ae",
    "metadata": {
     "tags": []
@@ -844,7 +855,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 23,
+   "execution_count": 22,
    "id": "e136d05d-671d-420f-95b9-5f350bc7a94c",
    "metadata": {
     "tags": []
@@ -861,7 +872,7 @@
        "dtype: float64"
       ]
      },
-     "execution_count": 23,
+     "execution_count": 22,
      "metadata": {},
      "output_type": "execute_result"
     }
@@ -872,7 +883,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 24,
+   "execution_count": 23,
    "id": "ad352680-433a-4026-b7b5-560b682dfb96",
    "metadata": {
     "tags": []
@@ -948,7 +959,7 @@
        "4  0.443790 -0.801005  1.368049"
       ]
      },
-     "execution_count": 24,
+     "execution_count": 23,
      "metadata": {},
      "output_type": "execute_result"
     }