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@Grice-Lab

Grice Lab

Elizabeth Grice Research Lab at the University of Pennsylvania

Popular repositories Loading

  1. AlignerBoost AlignerBoost Public

    AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality framework

    Java 11 2

  2. HmmUFOtu HmmUFOtu Public

    An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing

    C++ 10 9

  3. MSGseqTK MSGseqTK Public

    A Metagenomics Shotgun Sequencing Toolkit for NGS read mapping and cleaning based on a novel incremental and parallel FMD-index algorithm

    C++ 1

  4. EAGenomeAssembly EAGenomeAssembly Public

    Breaking out the assembly pipeline into its own repo (mapping files are still located in ClubGrice/mapping_files until publishable)

    Shell

  5. DFUStrainsWGS DFUStrainsWGS Public

    This repo contains scripts related to the whole genome sequencing of >200 isolates of S. aureus from people with diabetic foot ulcers (DFU100 project)

    Shell

  6. IowaWound IowaWound Public

    Iowa Wound Pain analyses 2020

    R

Repositories

Showing 7 of 7 repositories
  • IowaWound Public

    Iowa Wound Pain analyses 2020

    Grice-Lab/IowaWound’s past year of commit activity
    R 0 0 0 0 Updated May 15, 2024
  • HmmUFOtu Public

    An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing

    Grice-Lab/HmmUFOtu’s past year of commit activity
    C++ 10 GPL-3.0 9 11 1 Updated Apr 8, 2024
  • DFUStrainsWGS Public

    This repo contains scripts related to the whole genome sequencing of >200 isolates of S. aureus from people with diabetic foot ulcers (DFU100 project)

    Grice-Lab/DFUStrainsWGS’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 17, 2023
  • Staphyloxanthin Public

    Code repository for Staphyloxanthin paper

    Grice-Lab/Staphyloxanthin’s past year of commit activity
    R 0 0 0 0 Updated Sep 27, 2023
  • AlignerBoost Public

    AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality framework

    Grice-Lab/AlignerBoost’s past year of commit activity
    Java 11 2 2 0 Updated Mar 1, 2022
  • EAGenomeAssembly Public

    Breaking out the assembly pipeline into its own repo (mapping files are still located in ClubGrice/mapping_files until publishable)

    Grice-Lab/EAGenomeAssembly’s past year of commit activity
    Shell 0 BSD-3-Clause 0 0 0 Updated Feb 7, 2022
  • MSGseqTK Public

    A Metagenomics Shotgun Sequencing Toolkit for NGS read mapping and cleaning based on a novel incremental and parallel FMD-index algorithm

    Grice-Lab/MSGseqTK’s past year of commit activity
    C++ 0 GPL-3.0 1 0 0 Updated Jan 18, 2022

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