Merge pull request #2 from HealthBioscienceIDEAS/alexapichet-patch-1

Update diffusion-weighted-imaging.Rmd
HealthBioscienceIDEAS · Aug 28, 2024 · 71569b7 · 71569b7
2 parents d0d8011 + a512a6b
commit 71569b7
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/episodes/diffusion-weighted-imaging.Rmd b/episodes/diffusion-weighted-imaging.Rmd
@@ -68,8 +68,8 @@ cd sub-OAS30001/dwi
 fsleyes sub-OAS30001_dwi.nii.gz
 
 ## Text files
-cat sub-OAS30001_ses-d2430_dwi.bval
-cat sub-OAS30001_ses-d2430_dwi.bvec
+cat sub-OAS30001_dwi.bval
+cat sub-OAS30001_dwi.bvec
 ```
 :::::::::::::::::::: spoiler
 ### The command should show the following content
@@ -225,7 +225,7 @@ The command is `dtifit`, and uses the eddy-corrected data as input. All the inpu
 # -r,--bvecs	b vectors file
 # -b,--bvals	b values file
 
-dtifit --data=sub-OAS30001_eddy_corrected.nii.gz --mask=sub-OAS30001_b0_bet_mask.nii.gz --bvecs=sub-OAS30001_dwi.bvec --bvals=sub-OAS30001_dwi.bval --out=../dti/sub-OAS30001_
+dtifit --data=sub-OAS30001_eddy_corrected.nii.gz --mask=sub-OAS30001_b0_bet_mask.nii.gz --bvecs=sub-OAS30001_dwi.bvec --bvals=sub-OAS30001_dwi.bval --out=../dwi/sub-OAS30001_
 ```
 
 Many files have been created, let's look at the ones most commonly used, i.e. FA, MD and V1.\