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Update validate-submission.yaml
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kimberlynroosa authored Feb 18, 2025
1 parent 210ef08 commit 0ce123d
Showing 1 changed file with 21 additions and 68 deletions.
89 changes: 21 additions & 68 deletions .github/workflows/validate-submission.yaml
Original file line number Diff line number Diff line change
@@ -1,81 +1,34 @@
name: Hub Submission Validation (R)

on:
workflow_dispatch:
push:
branches:
- main
pull_request:
branches: main
paths:
- 'model-output/**'
- 'model-metadata/*'
branches:
- main

jobs:
validate-submission:
runs-on: ubuntu-22.04
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
runs-on: ubuntu-latest

steps:
- name: Check out repository
uses: actions/checkout@v3
with:
fetch-depth: 2
- name: Set up R
uses: r-lib/actions/setup-r@v2
with:
install-r: false
use-public-rspm: true

- name: Install system dependencies
run: |
sudo apt-get update
sudo apt-get install libcurl4-openssl-dev libv8-dev
- name: Cache R packages
uses: actions/cache@v4
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-r-${{ hashFiles('DESCRIPTION') }}
restore-keys: ${{ runner.os }}-r-
- name: Checkout repository
uses: actions/checkout@v3

- name: Install hubUtils from specific branch
run: |
Rscript -e 'install.packages("remotes")'
Rscript -e 'remotes::install_github("kjsato/hubUtils@main-mr_schema", upgrade = "never")'
- name: Install hubData from specific branch
run: |
Rscript -e 'remotes::install_github("kjsato/hubData@main-mr_schema", upgrade = "never")'
- name: Install hubAdmin from specific branch
run: |
Rscript -e 'remotes::install_github("kjsato/hubAdmin@main-mr_schema", upgrade = "never")'
- name: Install HubValidations
run: |
Rscript -e 'remotes::install_github("kjsato/hubValidations@main-mr_schema-conv_origin_date", upgrade = "never")'
- name: Set up R
uses: r-lib/actions/setup-r@v2

- name: Run validations
env:
PR_NUMBER: ${{ github.event.number }}
run: |
library("hubValidations")
v <- hubValidations::validate_pr(
gh_repo = Sys.getenv("GITHUB_REPOSITORY"),
pr_number = Sys.getenv("PR_NUMBER"),
skip_submit_window_check = FALSE
)
hubValidations::check_for_errors(v)
shell: Rscript {0}
- name: Check for changes
id: check_changes
run: |
git diff --quiet || echo "changes_detected=true" >> $GITHUB_ENV
- name: Commit and push changes
if: env.changes_detected == 'true'
run: |
git config --global user.name 'github-actions[bot]'
git config --global user.email '41898282+github-actions[bot]@users.noreply.github.com'
git add .
git commit -m "Automatically update files after validation"
git push origin HEAD:${{ github.head_ref }}
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: Cache R packages
uses: actions/cache@v4
with:
path: ${{ runner.tool_cache }}/R
key: ${{ runner.os }}-r-${{ hashFiles('**/*.lock') }}
restore-keys: |
${{ runner.os }}-r-
- name: Install dependencies
run: Rscript -e 'install.packages(readLines("dependencies.txt"))'

- name: Run validation script
run: Rscript validate.R

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