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Fix PubchemRunner

Fix PubchemRunner #284

Workflow file for this run

name: Test
on:
# Trigger the workflow on push or pull request,
# but only for the main branch
push:
branches:
- main
pull_request:
branches:
- main
jobs:
test:
strategy:
max-parallel: 20
matrix:
os: [ macos-latest ]
python-version: [ 3.8, 3.9 ]
# This distribution of tests is designed to ensure an approximately even time to finish for parallel jobs.
pkg:
- tests --ignore=tests/test_mdgopackmol.py
runs-on: ${{ matrix.os }}
steps:
- uses: actions/checkout@v2
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- uses: actions/cache@v2
if: startsWith(runner.os, 'macOS')
with:
path: ~/Library/Caches/pip
key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}
restore-keys: |
${{ runner.os }}-pip-
- uses: actions/cache@v2
if: startsWith(runner.os, 'Windows')
with:
path: ~\AppData\Local\pip\Cache
key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
restore-keys: |
${{ runner.os }}-pip-
- name: Install dependencies
run: |
pip install --upgrade pip wheel
pip install -r requirements.txt
pip install -r requirements-dev.txt
pip install -e .
- name: Prepare Packmol
run: |
echo $HOME
echo "$HOME/work/mdgo/mdgo/tests/packmol" >> $GITHUB_PATH
- name: Prepare Selenium
# https://github.com/marketplace/actions/setup-chromedriver
uses: nanasess/setup-chromedriver@master
- name: Start XVFB
run: |
export DISPLAY=:99
chromedriver --url-base=/wd/hub &
sudo Xvfb -ac :99 -screen 0 1280x1024x24 > /dev/null 2>&1 & # optional
- name: pytest ${{ matrix.pkg }}
run: |
pytest ${{ matrix.pkg }}