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@ICB-DCM

Data-driven Computational Modelling

Hasenauer Lab @ University of Bonn / Helmholtz Munich

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  1. pyABC pyABC Public

    distributed, likelihood-free inference

    Python 201 42

  2. pyPESTO pyPESTO Public

    python Parameter EStimation TOolbox

    Python 206 44

  3. parPE parPE Public

    Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

    C++ 19 4

  4. PESTO PESTO Public

    PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.

    MATLAB 26 12

Repositories

Showing 10 of 21 repositories
  • pyPESTO Public

    python Parameter EStimation TOolbox

    ICB-DCM/pyPESTO’s past year of commit activity
    Python 206 BSD-3-Clause 44 106 (4 issues need help) 10 Updated Jul 2, 2024
  • fiddy Public

    Finite difference methods.

    ICB-DCM/fiddy’s past year of commit activity
    Python 4 BSD-3-Clause 1 10 2 Updated Jul 1, 2024
  • pyABC Public

    distributed, likelihood-free inference

    ICB-DCM/pyABC’s past year of commit activity
    Python 201 BSD-3-Clause 42 38 0 Updated May 24, 2024
  • parPE Public

    Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

    ICB-DCM/parPE’s past year of commit activity
    C++ 19 MIT 4 58 (1 issue needs help) 3 Updated Dec 13, 2023
  • custom_ci_image Public

    Testing custom CI image for parPE

    ICB-DCM/custom_ci_image’s past year of commit activity
    Shell 0 0 0 0 Updated Dec 11, 2023
  • model_calibration_protocol Public
    ICB-DCM/model_calibration_protocol’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 2 0 0 Updated Nov 24, 2022
  • SBMLimporter Public

    MATLAB toolbox to generate ODE models from SBML files

    ICB-DCM/SBMLimporter’s past year of commit activity
    MATLAB 1 BSD-3-Clause 0 0 0 Updated Nov 2, 2022
  • MEMOIR Public

    MATLAB toolbox for Mixed Effect Model InfeRence

    ICB-DCM/MEMOIR’s past year of commit activity
    MATLAB 2 BSD-3-Clause 1 2 0 Updated Aug 3, 2022
  • SPToolbox Public
    ICB-DCM/SPToolbox’s past year of commit activity
    MATLAB 0 BSD-3-Clause 0 1 0 Updated Jul 26, 2021
  • lookahead-study Public

    Code for the pyABC dynamic look-ahead scheduling study

    ICB-DCM/lookahead-study’s past year of commit activity
    Jupyter Notebook 3 MIT 0 2 0 Updated Jun 18, 2021
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