Add ADAS and MMSE (#40)

IHCC-cohorts · Nov 27, 2020 · b99d903 · b99d903
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diff --git a/gecko.owl b/gecko.owl
@@ -1183,6 +1183,30 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/GECKO_0000134 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000134">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000119"/>
+        <obo:GECKO_9000000 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cognitive functioning</obo:GECKO_9000000>
+        <obo:GECKO_9000001 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ADAS</obo:GECKO_9000001>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A cognitive measurement that is an output of the Alzheimer&apos;s Disease Assessment Scale.</obo:IAO_0000115>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Alzheimer&apos;s Disease Assessment Scale measurement</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/GECKO_0000135 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000135">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000119"/>
+        <obo:GECKO_9000000 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">cognitive functioning</obo:GECKO_9000000>
+        <obo:GECKO_9000001 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MMSE</obo:GECKO_9000001>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A cognitive measurement that is an output of the Mini-Mental State Exam.</obo:IAO_0000115>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Mini-Mental State Exam measurement</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/GO_0008150 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0008150">

diff --git a/src/ontology/templates/gecko.tsv b/src/ontology/templates/gecko.tsv
@@ -57,3 +57,5 @@ religious affiliation	religion	information content entity	Information about an i
 human social environment	social environment	immaterial entity	An immaterial entity that encompasses the domain made up of interactions between the individual's physical environment, social processes, and relationships with other individuals and groups.	PMID:10352860	other questionnaire/survey data					
 family history of disease	family history of disease	clinical history	A clinical history that is about any family history of disease.		other questionnaire/survey data	
 diagnostic procedure history	diagnostic interventions	non-pharmacological treatment history	A non-pharmacological treatment history that is about diagnostic procedures to determine a condition or disease.		non-pharmacological interventions					Includes procedures such as colonoscopies, ultrasounds, etc., but excludes laboratory tests.				
+Alzheimer's Disease Assessment Scale measurement	ADAS	cognitive measurement	A cognitive measurement that is an output of the Alzheimer's Disease Assessment Scale.		cognitive functioning					
+Mini-Mental State Exam measurement	MMSE	cognitive measurement	A cognitive measurement that is an output of the Mini-Mental State Exam.		cognitive functioning					
diff --git a/src/ontology/templates/index.tsv b/src/ontology/templates/index.tsv
@@ -77,6 +77,8 @@ GECKO:0000130	religious affiliation
 GECKO:0000131	human social environment
 GECKO:0000132	family history of disease
 GECKO:0000133	diagnostic procedure history
+GECKO:0000134	Alzheimer's Disease Assessment Scale measurement
+GECKO:0000135	Mini-Mental State Exam measurement
 GO:0008150	biological_process
 IAO:0000005	objective specification
 IAO:0000027	data item

diff --git a/views/ihcc-gecko.csv b/views/ihcc-gecko.csv
@@ -94,6 +94,8 @@ perception of health and quality of life,GECKO:0000128,functional limitations,In
 perception of health and quality of life,GECKO:0000129,use of assistive devices,Information about an individual's use of assistive devices in performing daily activities.
 questionnaire/survey data,GECKO:0000118,cognitive and psychological measurements,A measurement datum of some aspect of human psychology.
 cognitive and psychological measurements,GECKO:0000119,cognitive functioning,"A psychological measurement of some aspect of intellectual functions such as memory, problem solving, and comprehension."
+cognitive functioning,GECKO:0000134,ADAS,A cognitive measurement that is an output of the Alzheimer's Disease Assessment Scale.
+cognitive functioning,GECKO:0000135,MMSE,A cognitive measurement that is an output of the Mini-Mental State Exam.
 cognitive and psychological measurements,GECKO:0000120,personality,"A psychological measurement of a person's individual sets of behaviours, cognitions, and emotional patterns."
 cognitive and psychological measurements,GECKO:0000121,psychological distress and emotions,A biological process that results from neurophysiological changes in response to internal and external events.
 questionnaire/survey data,MONDO:0000001,diseases,A disease is a disposition to undergo pathological processes that exists in an organism because of one or more disorders in that organism.

diff --git a/views/ihcc-gecko.owl b/views/ihcc-gecko.owl
@@ -963,6 +963,28 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/GECKO_0000134 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000134">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000119"/>
+        <obo:IAO_0000115>A cognitive measurement that is an output of the Alzheimer&apos;s Disease Assessment Scale.</obo:IAO_0000115>
+        <oboInOwl:hasExactSynonym>Alzheimer&apos;s Disease Assessment Scale measurement</oboInOwl:hasExactSynonym>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ADAS</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/GECKO_0000135 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000135">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000119"/>
+        <obo:IAO_0000115>A cognitive measurement that is an output of the Mini-Mental State Exam.</obo:IAO_0000115>
+        <oboInOwl:hasExactSynonym>Mini-Mental State Exam measurement</oboInOwl:hasExactSynonym>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">MMSE</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/IAO_0000005 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000005">