Add "family history of disease" (#36)

* Add family history of disease * Revert Makefile change
IHCC-cohorts · Nov 27, 2020 · e5875d5 · e5875d5
1 parent d9632bb
commit e5875d5
Show file tree

Hide file tree

Showing 5 changed files with 26 additions and 0 deletions.
diff --git a/gecko.owl b/gecko.owl
@@ -1158,6 +1158,18 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/GECKO_0000132 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000132">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/OGMS_0000015"/>
+        <obo:GECKO_9000000 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">other questionnaire/survey data</obo:GECKO_9000000>
+        <obo:GECKO_9000001 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">family history of disease</obo:GECKO_9000001>
+        <obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">A clinical history that is about any family history of disease.</obo:IAO_0000115>
+        <rdfs:label rdf:datatype="http://www.w3.org/2001/XMLSchema#string">family history of disease</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/GO_0008150 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/GO_0008150">

diff --git a/src/ontology/templates/gecko.tsv b/src/ontology/templates/gecko.tsv
@@ -55,3 +55,4 @@ information on functional limitations	functional limitations	information content
 information on use of assistive devices	use of assistive devices	information content entity	Information about an individual's use of assistive devices in performing daily activities.	Maelstrom:Use_devices	perception of health and quality of life					
 religious affiliation	religion	information content entity	Information about an individual's association with a religion, denomiation, or sub- or non-denominational religious group.	url:http://archive.stats.govt.nz/methods/classifications-and-standards/classification-related-stats-standards/religious-affiliation/definition.aspx	socio-demographic and economic characteristics					
 human social environment	social environment	immaterial entity	An immaterial entity that encompasses the domain made up of interactions between the individual's physical environment, social processes, and relationships with other individuals and groups.	PMID:10352860	other questionnaire/survey data					
+family history of disease	family history of disease	clinical history	A clinical history that is about any family history of disease.		other questionnaire/survey data					
diff --git a/src/ontology/templates/index.tsv b/src/ontology/templates/index.tsv
@@ -75,6 +75,7 @@ GECKO:0000128	information on functional limitations
 GECKO:0000129	information on use of assistive devices
 GECKO:0000130	religious affiliation
 GECKO:0000131	human social environment
+GECKO:0000132	family history of disease
 GO:0008150	biological_process
 IAO:0000005	objective specification
 IAO:0000027	data item

diff --git a/views/ihcc-gecko.csv b/views/ihcc-gecko.csv
@@ -82,6 +82,7 @@ questionnaire/survey data,GECKO:0000116,other questionnaire/survey data,
 other questionnaire/survey data,EUPATH:0000147,cause of death,An information content entity indicating the cause of death for a participant in the study.
 other questionnaire/survey data,GECKO:0000114,reproduction,"A clinical history that is about pregnancy, maternity, fertility, menses, and any other reproductive aspect."
 other questionnaire/survey data,GECKO:0000131,social environment,"An immaterial entity that encompasses the domain made up of interactions between the individual's physical environment, social processes, and relationships with other individuals and groups."
+other questionnaire/survey data,GECKO:0000132,family history of disease,A clinical history that is about any family history of disease.
 other questionnaire/survey data,MF:0000041,personal beliefs and values,
 other questionnaire/survey data,OGMS:0000020,signs and symptoms,"A process experienced by the patient, which can only be experienced by the patient, that is hypothesized to be clinically relevant."
 other questionnaire/survey data,UBERON:0000105,life stage/time point,A spatiotemporal region encompassing some part of the life cycle of an organism.

diff --git a/views/ihcc-gecko.owl b/views/ihcc-gecko.owl
@@ -940,6 +940,17 @@
 
 
 
+    <!-- http://purl.obolibrary.org/obo/GECKO_0000132 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/GECKO_0000132">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/GECKO_0000116"/>
+        <obo:IAO_0000115>A clinical history that is about any family history of disease.</obo:IAO_0000115>
+        <oboInOwl:hasExactSynonym>family history of disease</oboInOwl:hasExactSynonym>
+        <rdfs:label>family history of disease</rdfs:label>
+    </owl:Class>
+
+
+
     <!-- http://purl.obolibrary.org/obo/IAO_0000005 -->
 
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/IAO_0000005">