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INFIMM-Bioinformatics · Aug 1, 2023 · ec90d3d · ec90d3d
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commit ec90d3d
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Showing 13 changed files with 3,173 additions and 3,168 deletions.
diff --git a/.gitignore b/.gitignore
@@ -2,10 +2,15 @@
 data/fastq
 data/nextflow_outputdir
 data/nextflow_wd
+~$*.xlsx
 .Rproj.user
 *.sh.e*
 *.sh.o*
 omnipathr-log/
 .Rhistory
 
 /.quarto/
+
+analysis/_site
+analysis/*_cache
+analysis/*_files
diff --git a/data/DElist/DE_H107_CAF04_CpG_immu1_vs_pre.csv b/data/DElist/DE_H107_CAF04_CpG_immu1_vs_pre.csv
diff --git a/data/DElist/DE_H107_CAF04_CpG_immu2_vs_pre.csv b/data/DElist/DE_H107_CAF04_CpG_immu2_vs_pre.csv
diff --git a/data/DElist/DE_H107_CAF09c_immu1_vs_pre.csv b/data/DElist/DE_H107_CAF09c_immu1_vs_pre.csv
diff --git a/data/DElist/DE_H107_CAF09c_immu2_vs_pre.csv b/data/DElist/DE_H107_CAF09c_immu2_vs_pre.csv
diff --git a/data/figure/corr_pathway_late_response.pdf b/data/figure/corr_pathway_late_response.pdf
diff --git a/data/figure/gsea_bubble.png b/data/figure/gsea_bubble.png
diff --git a/data/figure/immu1.png b/data/figure/immu1.png
diff --git a/data/figure/immu2.png b/data/figure/immu2.png
diff --git a/data/figure/pca_immune1.png b/data/figure/pca_immune1.png
diff --git a/data/figure/pca_immune2.png b/data/figure/pca_immune2.png
diff --git a/data/pathway_enrichment/GSEA_enrichment.rds b/data/pathway_enrichment/GSEA_enrichment.rds
diff --git a/data/pathway_enrichment/GSEA_enrichment_gobp.xlsx b/data/pathway_enrichment/GSEA_enrichment_gobp.xlsx