Release v0.1.1a13 September 2025

What's Changed

• Theory documentation for the soil microbial community by @jacobcook1995 in #947
• Bump the development-dependencies group with 6 updates by @dependabot[bot] in #992
• Bump actions/download-artifact from 4 to 5 by @dependabot[bot] in #993
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #994
• 989 foraging methods refactor to reduce resuse by @TaranRallings in #990
• Bump the development-dependencies group with 3 updates by @dependabot[bot] in #1000
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #1003
• Changed litter model to use exact solution for the litter pool size by @jacobcook1995 in #1001
• 536 add check for nan values before running the soil model by @jacobcook1995 in #1004
• Removed bulk density from the soil model as it isn't actually used by @jacobcook1995 in #1005
• Bump the development-dependencies group with 2 updates by @dependabot[bot] in #1007
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #1008
• Bump actions/checkout from 4 to 5 by @dependabot[bot] in #1009
• Feature/soil trophic piping by @TaranRallings in #1012
• Animal-Plant piping class draft by @TaranRallings in #986
• Updated testing groups in config toml to capture new foraging pipelines by @TaranRallings in #1014
• Bump the development-dependencies group with 5 updates by @dependabot[bot] in #1016
• Clamping function by @davidorme in #1011
• 959 sort out time interval in energy balance by @vgro in #988
• Update RTD Python version by @davidorme in #1019
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #1020
• Feature/update abiotic docs by @vgro in #1017
• Stoichiometry recruitment by @sallymatson in #971
• Adopt pytest-xdist by @davidorme in #1023
• Updating stoichiometry names by @davidorme in #1027
• 975 test abiotic model with no canopy by @vgro in #1021
• Recruitment of new tree cohorts by @davidorme in #827
• Bump actions/setup-python from 5 to 6 by @dependabot[bot] in #1029
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #1031
• Bump the development-dependencies group across 1 directory with 5 updates by @dependabot[bot] in #1030
• Bump the development-dependencies group with 4 updates by @dependabot[bot] in #1042
• v0.1.1 alpha 13 release by @jacobcook1995 in #1045

Full Changelog: v0.1.1a12_2025_08_05...v0.1.1a13_2025_09_18

Release v0.1.1a12 August 2025

N.B. release v0.1.1 alpha 11 had to be skipped due to problems with the release pipeline

What's Changed

• Add more informative update messages by @davidorme in #872
• First draft of nicely styled team page: by @davidorme in #690
• Updating ve_run verbosity by @davidorme in #903
• 888 animal model foraging time budget by @TaranRallings in #906
• Bump the development-dependencies group with 4 updates by @dependabot[bot] in #914
• Bump sphinxcontrib-bibtex from 2.6.3 to 2.6.4 in the sphinx group by @dependabot[bot] in #915
• Stop negative growth rates from resulting in negative enzyme productions by @jacobcook1995 in #920
• 848 abiotic model add latent heat flux to derivative of temperature update by @vgro in #897
• 880 soil moisture capacity needs to come out of core constants by @vgro in #921
• Bump the development-dependencies group with 3 updates by @dependabot[bot] in #925
• Bump sphinxcontrib-bibtex from 2.6.4 to 2.6.5 in the sphinx group by @dependabot[bot] in #926
• Update pyrealm version by @davidorme in #922
• Suggestions for 686 by @davidorme in #905
• Updating documentation of static models on config page. by @sallymatson in #702
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #868
• Add cohort data exporter from PlantsModel by @davidorme in #912
• Missed push from #911 by @davidorme in #929
• Bump the development-dependencies group with 2 updates by @dependabot[bot] in #931
• Allow animal consumption of soil pools by @jacobcook1995 in #917
• return mean vertical flow for all layers by @vgro in #930
• Updating NDArray typing by @davidorme in #928
• StemStochiometry basic structure. by @sallymatson in #825
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #935
• Bumped version for 0.1.1 alpha release 11 by @jacobcook1995 in #939
• Changed test publication upload step to give verbose errors by @jacobcook1995 in #942
• added 4-bucket model to documentation by @vgro in #938
• Bump the development-dependencies group with 3 updates by @dependabot[bot] in #946
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #951
• corrected direction of arrow by @vgro in #949
• 780 abiotic model account properly for time step and area in particular with energy fluxes by @vgro in #933
• clarification of figure caption by @vgro in #953
• Changed calculation of removal rate of nutrients due to water by @jacobcook1995 in #954
• 916 animal reworking the cohort initialization system by @TaranRallings in #944
• Bump the production-dependencies group with 2 updates by @dependabot[bot] in #955
• Bump the development-dependencies group with 4 updates by @dependabot[bot] in #956
• Added production of fungal fruiting bodies by @jacobcook1995 in #948
• 782 abiotic model relative humidity is 100 we need to include some form of advectionoutlet by @vgro in #957
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #963
• 958 vertical mixing of temperature by @vgro in #960
• Fixing incorrect plant growth by @davidorme in #962
• Structure for Extra PFT Traits. by @sallymatson in #943
• 967 reactivate aerodynamic resistance calculation by @vgro in #970
• Bump the development-dependencies group with 5 updates by @dependabot[bot] in #972
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci[bot] in #974
• 973 test abiotic model with different number of canopy layers by @vgro in #976
• link removed by @vgro in #978
• Unpin the update interval in hydrology by @davidorme in #981
• Bump the development-dependencies group with 5 updates by @dependabot[bot] in #984
• Release 0.1.1a12 by @jacobcook1995 in #985

Full Changelog: v0.1.1a10_2025_06_17...v0.1.1a12_2025_08_05

Release v0.1.1a10 June 2025

What's Changed

• Added mycorrhizal fungi to the soil model by @jacobcook1995 in #834
• 823 dont allow rainfall to be negative by @vgro in #843
• Fixing config parsing by @davidorme in #845
• Adopt pre commit hook for the codespell tool by @davidorme in #847
• Fixing yld 0.17 to 0.6 by @davidorme in #852
• replaced water_to_air_mass_ratio in abiotic constants with molecular_… by @vgro in #850
• Bump scipy from 1.15.2 to 1.15.3 in the production-dependencies group by @dependabot in #853
• Bump the development-dependencies group with 4 updates by @dependabot in #854
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #856
• 704 the plantsmodel is pretending to calculate evapotranspiration by @vgro in #860
• Bump the production-dependencies group with 2 updates by @dependabot in #864
• Bump the development-dependencies group with 4 updates by @dependabot in #865
• 831 calculation of net radiation needs to find a place by @vgro in #866
• Convert plant variables into units used by the soil and litter model by @jacobcook1995 in #867
• added conditional statement to avoid division by zero by @vgro in #870
• Replace CUE with a logistic expression by @jacobcook1995 in #767
• Add proper explanation of soil carbon and macronutrient cycles to the soil model documentation by @jacobcook1995 in #752
• Bump the production-dependencies group across 1 directory with 3 updates by @dependabot in #877
• Bump the development-dependencies group across 1 directory with 8 updates by @dependabot in #878
• 855 hydrology set initial constants based on data and add references and units by @vgro in #857
• 858 abiotic set initial constants based on data and add references and units by @vgro in #859
• Add effective saturation calculation to hydrology tools by @jacobcook1995 in #881
• Added information variables used to the soil model implementation docs by @jacobcook1995 in #884
• Silence unneeded divide by zero warnings by @jacobcook1995 in #886
• Bump the development-dependencies group with 5 updates by @dependabot in #889
• Animals - Trophic Expansion by @TaranRallings in #875
• Bump xarray from 2025.4.0 to 2025.6.1 in the production-dependencies group by @dependabot in #895
• Bump the development-dependencies group with 2 updates by @dependabot in #896
• 890 mycorrhizal fungi should be obligate rather than able to survive via saprotrophy by @jacobcook1995 in #893
• 887 animal model handling starvation during ontogeny by @TaranRallings in #894
• Bumped version for v0.1.1 alpha 10 prerelease by @jacobcook1995 in #898

Full Changelog: v0.1.1a9_2025_05_07...v0.1.1a10_2025_06_17

Release v0.1.1a9 May 2025

What's Changed

• 666 repair model attribute typing and docstrings by @sallymatson in #692
• Bump the development-dependencies group with 2 updates by @dependabot in #698
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #701
• Replacing sphinx-tabs with sphinx-design by @davidorme in #706
• Remove depends section from schemas by @dalonsoa in #694
• Add a data method to validate data frame variables by @davidorme in #658
• Adding inorganic nitrogen pools to the soil model by @jacobcook1995 in #700
• Allow [[core.data.variable]] to be split across files by @davidorme in #710
• Bump the development-dependencies group with 6 updates by @dependabot in #718
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #719
• Update config file path resolution by @davidorme in #716
• Make data loading more efficient by opening each source file once only by @davidorme in #712
• Adding python 3.13 as a supported version by @jacobcook1995 in #725
• Update sphinx to 8.1 by @davidorme in #729
• Add nitrogen fixation to the soil model by @jacobcook1995 in #724
• Bump the development-dependencies group with 3 updates by @dependabot in #731
• Added step to catch infinite stochiometries by @jacobcook1995 in #733
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #734
• Make bypass setup and run update invalid in static models by @dalonsoa in #693
• Using pyrealm within the Plants model by @davidorme in #707
• 703 adding growth to the plantsmodel by @sallymatson in #730
• Bump dask from 2025.1.0 to 2025.2.0 in the production-dependencies group by @dependabot in #742
• Bump the development-dependencies group with 2 updates by @dependabot in #743
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #744
• Feature/stoichiometry for Animals by @TaranRallings in #726
• Bump scipy from 1.15.1 to 1.15.2 in the production-dependencies group by @dependabot in #756
• Bump the development-dependencies group with 2 updates by @dependabot in #757
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #759
• Add exudation of root carbohydrates and uptake of nutrients by plants by @jacobcook1995 in #738
• 721 plantsmodel to use swdown radation by @sallymatson in #741
• Added separate bacteria and fungi pools by @jacobcook1995 in #762
• Bump the development-dependencies group with 6 updates by @dependabot in #763
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #764
• Bump the development-dependencies group with 4 updates by @dependabot in #774
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #776
• Feature/new microclimate model by @vgro in #751
• renamed hydrology constants by @vgro in #784
• Create plant constants for lignin and C:N / C:P ratios by @sallymatson in #773
• Removed soil_moisture_capacity from hydrology constants by @jacobcook1995 in #785
• Separate enzymes by whether they are produced by bacteria or fungi by @jacobcook1995 in #766
• 747 initial simple mortality by @sallymatson in #765
• Bump the development-dependencies group with 3 updates by @dependabot in #787
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #788
• docstrings fixed by @vgro in #793
• renames zero_plane_displacement in conftest and data variables toml by @vgro in #791
• Bump the production-dependencies group with 2 updates by @dependabot in #796
• Bump the development-dependencies group with 4 updates by @dependabot in #797
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #799
• 798 sort out units of specific heat air latent heat vapourisation density of air by @vgro in #800
• Improved microbial enzyme secretion model by @jacobcook1995 in #801
• Average abiotic quantities over relevant soil layers by @jacobcook1995 in #803
• Animals - Aquatic Reproduction and External Migration by @TaranRallings in #775
• Bump hypothesis from 6.130.2 to 6.130.5 in the development-dependencies group by @dependabot in #809
• Feature/794 aero resistance by @vgro in #807
• Add plant reproductive tissue and gpp topslice integration. by @sallymatson in #812
• Split up plant RT turnover into propagule and non-propagule. by @sallymatson in #813
• Bump xarray from 2025.3.0 to 2025.3.1 in the production-dependencies group by @dependabot in #819
• Bump the development-dependencies group with 4 updates by @dependabot in #820
• Feature/canopy evaporation by @vgro in #789
• Dividing propagules by PFT and other issues by @davidorme in #822
• Update to pyrealm 2.0.0rc2, add reproductive tissue and carbon servicing by @sallymatson in #811
• glossary expanded by soil moisture terms by @vgro in #821
• Adding subcanopy vegetation by @davidorme in #818
• Bump the development-dependencies group with 2 updates by @dependabot in #828
• 755 animals vertical occupancy by @TaranRallings in #817
• 771 replace soil moisture to matric potential conversion function with van genuchten implementation by @vgro in #826
• Bump numpy from 2.2.4 to 2.2.5 in the production-dependencies group by @dependabot in #832
• Bump the development-dependencies group with 3 updates by @dependabot in #833
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #810
• Bump dask from 2025.3.0 to 2025.4.1 in the production-dependencies group by @dependabot in #836
• Bump the development-dependencies group with 5 updates by @dependabot in #837
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #83...

Release v1.0.0a8 January 2025

What's Changed

• 681 setup skipped improperly by @sallymatson in #682
• Csvxlsx file reader by @sallymatson in #664
• Bump the production-dependencies group with 2 updates by @dependabot in #683
• Bump the development-dependencies group with 2 updates by @dependabot in #684
• Bump abatilo/actions-poetry from 3.0.2 to 4.0.0 by @dependabot in #685
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #689
• Windows specific getting started instructions by @jacobcook1995 in #678
• Update package version ready for 0.1.1 alpha release 8 by @jacobcook1995 in #691

Full Changelog: v0.1.1a7_2025_02_15...v0.1.1a8_2025_01_21

Release v1.0.0a7 January 2025

What's Changed

• Bump abatilo/actions-poetry from 2.3.0 to 3.0.0 by @dependabot in #555
• Bump pytest-cov from 3.0.0 to 5.0.0 by @dependabot in #557
• Bump actions/upload-artifact from 3 to 4 by @dependabot in #554
• Add animal consumption of litter by @jacobcook1995 in #566
• Bump jupyterlab from 4.2.3 to 4.2.5 by @dependabot in #560
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #542
• Add waste from herbivore mechanical inefficiencies to the litter by @jacobcook1995 in #577
• Bump pint from 0.24.1 to 0.24.3 by @dependabot in #571
• Bump ipython from 8.26.0 to 8.27.0 by @dependabot in #572
• Bump types-jsonschema from 4.22.0.20240610 to 4.23.0.20240813 by @dependabot in #573
• Updating example data formats to consistent NetCDF4 by @davidorme in #586
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #576
• Execution order based on variables by @dalonsoa in #548
• Added automerge github workflow by @jacobcook1995 in #584
• Bump autodocsumm from 0.2.12 to 0.2.13 by @dependabot in #574
• Stop bots from running codecov upload step in CI by @davidorme in #590
• Bump tqdm from 4.66.4 to 4.66.5 by @dependabot in #580
• Bump mypy from 1.10.1 to 1.11.2 by @dependabot in #579
• Bump ipykernel from 6.29.4 to 6.29.5 by @dependabot in #578
• Added handling of herbivory waste products to the litter model by @jacobcook1995 in #583
• Bump tomli from 2.0.1 to 2.0.2 by @dependabot in #594
• Bump pre-commit from 3.8.0 to 4.0.1 by @dependabot in #595
• Bump matplotlib from 3.9.0 to 3.9.2 by @dependabot in #597
• Bump sphinx-rtd-theme from 2.0.0 to 3.0.1 by @dependabot in #598
• Bump ipython from 8.27.0 to 8.28.0 by @dependabot in #596
• Try and group dependabot PRs by @davidorme in #592
• Bump dask from 2023.12.1 to 2024.9.1 in the production-dependencies group by @dependabot in #599
• Bump pytest from 7.4.4 to 8.3.3 by @dependabot in #575
• Bump sphinxcontrib-mermaid from 0.9.2 to 1.0.0 by @dependabot in #601
• Bump mdformat-frontmatter from 0.4.1 to 2.0.8 in the development-dependencies group across 1 directory by @dependabot in #603
• Bump sphinx from 7.4.7 to 8.1.3 by @dependabot in #602
• Revert "Bump sphinx from 7.4.7 to 8.1.3" by @davidorme in #604
• Adding jupytext to pre commit to apply black to myst notebook code by @davidorme in #607
• Bump dask from 2024.9.1 to 2024.10.0 in the production-dependencies group by @dependabot in #608
• Bump sphinx from 7.4.7 to 8.1.3 by @dependabot in #610
• Bump the development-dependencies group with 2 updates by @dependabot in #609
• Revert "Bump sphinx from 7.4.7 to 8.1.3" by @davidorme in #611
• Litter model theory and implementation docs by @jacobcook1995 in #593
• Bump the production-dependencies group with 2 updates by @dependabot in #613
• Bump the development-dependencies group with 4 updates by @dependabot in #614
• Bump abatilo/actions-poetry from 3.0.0 to 3.0.1 by @dependabot in #617
• Bump the production-dependencies group with 2 updates by @dependabot in #618
• Bump the development-dependencies group with 3 updates by @dependabot in #619
• Adding nitrogen mineralisation by @jacobcook1995 in #616
• Bump the production-dependencies group with 3 updates by @dependabot in #620
• Bump hypothesis from 6.116.0 to 6.118.4 in the development-dependencies group by @dependabot in #621
• Bump the production-dependencies group with 2 updates by @dependabot in #622
• Bump sphinx-rtd-theme from 3.0.1 to 3.0.2 in the sphinx group by @dependabot in #624
• Bump the development-dependencies group with 2 updates by @dependabot in #623
• Bump codecov/codecov-action from 4 to 5 by @dependabot in #625
• Bump xarray from 2024.10.0 to 2024.11.0 in the production-dependencies group by @dependabot in #626
• Bump the development-dependencies group with 3 updates by @dependabot in #627
• Bump the production-dependencies group with 2 updates by @dependabot in #629
• Bump the development-dependencies group with 3 updates by @dependabot in #630
• Animal - Feature/multi grid no community by @TaranRallings in #538
• Animal - Feature/multi grid occupancy by @TaranRallings in #530
• Added nitrogen limitation for microbial growth by @jacobcook1995 in #628
• Bump dask from 2024.11.2 to 2024.12.0 in the production-dependencies group by @dependabot in #632
• Bump the development-dependencies group with 4 updates by @dependabot in #633
• Animal docs update by @TaranRallings in #634
• Adds support for static models by @dalonsoa in #373
• Bump numpy from 2.1.3 to 2.2.0 in the production-dependencies group by @dependabot in #639
• Bump the development-dependencies group with 3 updates by @dependabot in #640
• Revert "Bump numpy from 2.1.3 to 2.2.0 in the production-dependencies group" by @davidorme in #641
• Adding pyrealm by @davidorme in #638
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #612
• 642 abiotic simple model add simple wind profile by @vgro in #643
• Bump dask from 2024.12.0 to 2024.12.1 in the production-dependencies group by @dependabot in #644
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #646
• Bump the development-dependencies group across 1 directory with 7 updates by @dependabot in #647
• Bump the production-dependencies group with 2 updates by @dependabot in #650
• Bump mypy from 1.14.0 to 1.14.1 in the development-dependencies group by @dependabot in #651
• Bump abatilo/actions-poetry from 3.0.1 to 4.0.0 by @depend...

Release v1.0.0a6 September 2024

What's Changed

• Release branch 0.1.1a5 by @jacobcook1995 in #550
• Add phosphorus to litter model by @jacobcook1995 in #539
• Improving how excrement and carcass decay is handled by @jacobcook1995 in #562
• Update tutorial documentation to mention need to delete old files by @jacobcook1995 in #551
• Bump xarray from 2024.6.0 to 2024.9.0 by @dependabot in #565
• Bump mdformat-tables from 0.4.1 to 1.0.0 by @dependabot in #558
• Bump pre-commit/action from 3.0.0 to 3.0.1 by @dependabot in #552
• Bump softprops/action-gh-release from 1 to 2 by @dependabot in #553
• Bump hypothesis from 6.104.1 to 6.112.1 by @dependabot in #564
• Bump version number for September 2024 develop release by @davidorme in #569

New Contributors

• @dependabot made their first contribution in #565

Full Changelog: v0.1.1a5...v0.1.1a6_2024_09_24

Release v0.1.1 alpha 5

What's Changed

• Feature/abiotic tools by @vgro in #340
• Feature/wind profiles by @vgro in #350
• Feature/energy balance init by @vgro in #357
• Feature/initialise for first timestep by @vgro in #362
• Feature/soil absorption by @vgro in #377
• Adding new BaseModel structure into the abiotic model. by @davidorme in #382
• Feature/use abiotic tools by @vgro in #386
• Publish version 0.1.0a0 by @davidorme in #401
• Fixing up PyPI issues in 0.1.0a0 by @davidorme in #404
• Feature/calculate conductivities by @vgro in #406
• Set up new trusted publication workflow by @davidorme in #408
• np.mean error fixed by @vgro in #414
• Feature/animal module - The Madingley Foraging Update by @TaranRallings in #410
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #409
• Feature - Feeding Animals into Data by @TaranRallings in #415
• Soil moisture units to mm in data object by @vgro in #420
• Feature/revised wind model by @vgro in #418
• Feature/juvenile dispersal - Adding juvenile dispersal to the Animal Module by @TaranRallings in #419
• Adding non-predation mortality and semelparity to the Animal Module. by @TaranRallings in #422
• Feature/add radiation input by @vgro in #423
• Feature/test ragged arrays by @vgro in #424
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #417
• Add the demo run to the website pages by @davidorme in #428
• Simplify the jupyter kernelspec setup by @davidorme in #429
• Feature/fixes for variables pr by @vgro in #430
• Update QA tool chain and add Python 3.12 by @davidorme in #433
• 434 soil temperature not returned correctly by @vgro in #435
• Rename 'animals' model to 'animal' by @davidorme in #439
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #440
• Variables 1 vgro by @vgro in #431
• Fixing Hydrology model to work with LayerStructure by @davidorme in #445
• LayerStructure updates for abiotic_simple by @davidorme in #448
• Indirect development in animals by @TaranRallings in #450
• Initial draft of abiotic model changes for new LayerStructure by @davidorme in #449
• Amending vertical layer structure by @davidorme in #441
• Update PULL_REQUEST_TEMPLATE.md by @vgro in #456
• Turning on single-threaded handling in dask by @davidorme in #457
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #443
• Add more functionality into LayerStructure. by @davidorme in #452
• Revised animal excretion by @TaranRallings in #460
• Setup for the documentation review by @davidorme in #455
• Updated TODOs across animal module code. by @TaranRallings in #475
• abiotic and hydrology models overview updated by @vgro in #476
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #478
• Adopt extended LayerStructure functionality by @davidorme in #459
• Adding a microbial necromass pool by @jacobcook1995 in #477
• Removed a handful of now defunct constants and methods. by @TaranRallings in #482
• Update ve theory by @vgro in #481
• Updating to numpy 2.0.0 by @davidorme in #454
• Animal model description in module_overview.md by @TaranRallings in #497
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #503
• Landing page links by @davidorme in #502
• Add abiotic documentation by @vgro in #500
• reference links added by @vgro in #505
• Update contributor docs by @davidorme in #499
• 507 add more theory to the theory by @vgro in #508
• 506 implementation of abiotic simple model docs by @vgro in #515
• Add variables setup by @dalonsoa in #388
• Direct input from plant model to the litter model by @jacobcook1995 in #509
• Review the implementation section of the docs by @davidorme in #516
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #520
• 519 review abiotic simple and hydrology docstrings to match updated documentation by @vgro in #521
• 490 hydrology docs on implementation by @vgro in #518
• abiotic model preliminary implementation by @vgro in #523
• climate recipes deleted and note on pre-processing in implementation by @vgro in #526
• 532 litter model should average abiotic quantities over relevant soil layers by @jacobcook1995 in #534
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #527
• Added tracking of litter nitrogen by @jacobcook1995 in #531
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #537
• Move setup step to init in Abiotic and AbioticSimple models by @dalonsoa in #524
• Release branch 0.1.1a5 by @jacobcook1995 in #550

Full Changelog: test_publish2...v0.1.1a5

Test Publish 2

test_publish2

Hopefully only one release job, hopefully codecov gets the token

Test

test_publish

Broken pyproject.toml - no idea how