Markov model simulation

The repository contains C code for a markov model implementation.

Compiling

Compiled via MAKE call:

make 

inside the src folder to build the program 'sim'.

Usage

the program takes the following command line arguments:

1. Number of iterations to run the simulations for
2. The transition probability matrix defining the model

The transition probability matrix is given row-wise such that the matrix:

$$ \begin{pmatrix}x_{00} & x_{01} \ x_{10} & x_{11}\end{pmatrix} $$ would have the following call:

./sim 100000 x_00 x_01 x_10 x_11

The same row-wise embedding goes for all probability matrix sizes.