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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

Popular repositories Loading

  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 81 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 34 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 27 3

  6. BigStitcher-Spark BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    Java 25 13

Repositories

Showing 10 of 275 repositories
  • neuronbridge Public

    EM/LM neuron search

    JavaScript 4 BSD-3-Clause 1 0 11 Updated Apr 2, 2025
  • jacs-cm Public

    JACS Configuration Management

    XSLT 8 3 17 3 Updated Apr 2, 2025
  • diff-rsync-o Public

    Linux scripts for transferring data from rig computers

    Shell 1 BSD-3-Clause 0 0 0 Updated Apr 2, 2025
  • jacs-compute Public

    JAnelia Compute Services (JACS)

    Java 1 BSD-3-Clause 0 0 0 Updated Apr 1, 2025
  • jacs-model Public

    JACS Domain Model and DAOs

    Java 1 BSD-3-Clause 0 0 0 Updated Apr 1, 2025
  • G4_Display_Tools Public

    Collection of tools for the G4 LED arena displays.

    MATLAB 2 CC-BY-4.0 4 12 0 Updated Apr 1, 2025
  • dis-utilities Public

    Utilities for Data and Information Services

    JavaScript 1 BSD-3-Clause 1 14 1 Updated Apr 1, 2025
  • hortacloud-website Public

    Documentation website for HortaCloud

    HTML 2 BSD-3-Clause 0 0 4 Updated Apr 1, 2025
  • neuronbridge-precompute Public

    Utilities for indexing and transferring of NeuronBridge-related files

    Python 0 BSD-3-Clause 0 0 0 Updated Apr 1, 2025
  • fileglancer-central Public

    Central metadata server for Fileglancer deployments

    Python 0 BSD-3-Clause 0 0 0 Updated Apr 1, 2025