refactor: use DaqScalersSequence from coatjava to generate QA bins
#1600
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: ci | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| defaults: | |
| run: | |
| shell: bash | |
| env: | |
| dataset: ci_test | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| # build | |
| ############################################################################# | |
| build_timeline: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: codecr.jlab.org/hallb/clas12/container-forge/base:latest | |
| options: --user root | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - name: build | |
| run: mvn install | |
| - run: bin/qtl --version | |
| - name: tar # to preserve any permissions | |
| run: | | |
| tar cavf build_timeline.tar.zst target | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: build_timeline | |
| retention-days: 1 | |
| path: build_timeline.tar.zst | |
| # download test data | |
| ############################################################################# | |
| download_test_data: | |
| runs-on: ubuntu-latest | |
| # NOTE: using Ubuntu runner, rather than a `container-forge` image, since it's much faster for cache hits | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| type: [ detectors, physics ] | |
| include: | |
| - { type: detectors, schema: mon } | |
| - { type: physics, schema: dst } | |
| env: | |
| xrootd_file: xroot://sci-xrootd.jlab.org//osgpool/hallb/clas12/validation/recon/${{ matrix.schema }}/validation_files.tar.zst | |
| steps: | |
| - uses: actions/cache@v4 | |
| id: cache | |
| with: | |
| key: validation_files_${{ matrix.type }} | |
| path: validation_files.tar.zst | |
| lookup-only: true | |
| - name: install dependencies | |
| if: ${{ steps.cache.outputs.cache-hit != 'true' }} | |
| run: | | |
| sudo apt -y update | |
| sudo apt -y upgrade | |
| sudo apt -y install xrootd-client | |
| - name: download | |
| if: ${{ steps.cache.outputs.cache-hit != 'true' }} | |
| run: xrdcp ${{ env.xrootd_file }} ./ | |
| - run: ls -lh . | |
| if: ${{ steps.cache.outputs.cache-hit != 'true' }} | |
| # histogramming | |
| ############################################################################# | |
| run_histogram: | |
| needs: | |
| - build_timeline | |
| - download_test_data | |
| runs-on: ubuntu-latest | |
| container: | |
| image: codecr.jlab.org/hallb/clas12/container-forge/base:latest | |
| options: --user root | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| type: [ detectors, physics ] | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - uses: actions/cache/restore@v4 | |
| with: | |
| key: validation_files_${{ matrix.type }} | |
| path: validation_files.tar.zst | |
| - name: download timeline build | |
| uses: actions/download-artifact@v5 | |
| with: | |
| name: build_timeline | |
| - name: untar | |
| run: ls *.tar.zst | xargs -I{} tar xavf {} | |
| - run: tree | |
| - name: qtl histogram | |
| run: | | |
| bin/qtl histogram \ | |
| -d ${{env.dataset}} \ | |
| --findhipo \ | |
| --series \ | |
| --focus-${{matrix.type}} \ | |
| validation_files | |
| - run: tree slurm | |
| - run: tree outfiles | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: slurm_${{ matrix.type }} | |
| retention-days: 1 | |
| path: slurm | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: outfiles_histogram_${{ matrix.type }} | |
| retention-days: 14 | |
| path: outfiles | |
| test_swifjob: | |
| needs: | |
| - build_timeline | |
| - download_test_data | |
| runs-on: ubuntu-latest | |
| container: | |
| image: codecr.jlab.org/hallb/clas12/container-forge/base:latest | |
| options: --user root | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| type: [ detectors, physics ] | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - uses: actions/cache/restore@v4 | |
| with: | |
| key: validation_files_${{ matrix.type }} | |
| path: validation_files.tar.zst | |
| - name: download timeline build | |
| uses: actions/download-artifact@v5 | |
| with: | |
| name: build_timeline | |
| - name: untar | |
| run: ls *.tar.zst | xargs -I{} tar xavf {} | |
| - run: tree | |
| - name: test swifjob | |
| run: | | |
| single_rundir=$(find validation_files -mindepth 1 -maxdepth 1 -type d | head -n1) | |
| echo "single_rundir = $single_rundir" | |
| util/test-swifjob.sh $single_rundir runner --focus-${{ matrix.type }} | |
| - run: tree runner | |
| # timeline production | |
| ############################################################################# | |
| run_analysis: | |
| needs: | |
| - run_histogram | |
| runs-on: ubuntu-latest | |
| container: | |
| image: codecr.jlab.org/hallb/clas12/container-forge/base:latest | |
| options: --user root | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| type: [ detectors, physics ] | |
| include: | |
| - { type: detectors, qtl_cmd: 'bin/qtl analysis', args: '-j 4 --skip-mya' } | |
| - { type: physics, qtl_cmd: 'bin/qtl physics', args: '' } | |
| steps: | |
| - uses: actions/checkout@v5 | |
| - name: download outfiles | |
| uses: actions/download-artifact@v5 | |
| with: | |
| pattern: outfiles_* | |
| merge-multiple: true | |
| path: outfiles | |
| - name: download timeline build | |
| uses: actions/download-artifact@v5 | |
| with: | |
| name: build_timeline | |
| - name: untar | |
| run: ls *.tar.zst | xargs -I{} tar xavf {} | |
| - run: tree | |
| - name: qtl analysis | |
| run: | | |
| ${{matrix.qtl_cmd}} \ | |
| -d ${{env.dataset}} \ | |
| -p web \ | |
| --custom-pub \ | |
| ${{matrix.args}} | |
| - run: tree outfiles | |
| - name: summarize | |
| run: | | |
| echo "# Output File Tree" >> $GITHUB_STEP_SUMMARY | |
| echo '```' >> $GITHUB_STEP_SUMMARY | |
| tree web | xargs -0 -I{} echo {} >> $GITHUB_STEP_SUMMARY | |
| echo '```' >> $GITHUB_STEP_SUMMARY | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: outfiles_timelines_${{ matrix.type }} | |
| retention-days: 14 | |
| path: outfiles | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: web_timelines_${{ matrix.type }} | |
| retention-days: 14 | |
| path: web |