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Releases: JoachimGoedhart/SuperPlotsOfData

v1.1.0

31 Jan 17:23
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Improvements and bug fixes:
-Fixed bug; now supports 'cloning' of color list and dot size
-Implemented ordering of conditions
-Use functions to calculate stats
-Improved support for stats (SD/CI) for showing split data
-Changed plotting of stats to allow correct display of stats (mean/median) per replicate (changed from 'stat_summary' to 'geom_point')
-Set the transparency of the big dot
-Type of error bars are now stored in 'clone setting'
-remove facetting labels/strips when legend is shown
-Added option to reflect 'n' per replicate by dot size
-Bug fix: Rounding of dataframe only for presentation of table not for calculations
-replaced some packages by {tidyverse}
-verified that app runs with R v4.2
-Replaced the deprecated funs() with list()
-Added example data from Bland-Altman
-Added calculation and reporting of repeatability stats
-Repeatability stats are available in Table 4
-Fixed a bug that prevented calculation of p-value for multiple conditions

v1.0.3

07 Jan 13:03
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Improvements and bug fixes:
-In case of identical values within a replicate, do not run Shapiro-Wilk test
-Added option to change size of dot for the statistical summary of each replicate
-Fixed a bug that prevented comparison of data with unequal number of replicates.
-Improved comparison for data with no replicates
-Added stringsAsFactors = TRUE to read.csv for compatibility with R version >4
-Improved detection of column used for replicates
-The quantitative comparison between conditions is based on means (not on medians) irrespective of the selected summary for display

v1.0.2

17 Nov 07:35
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Several bug fixes, improvements and new features:

-Improved support of Okabe&Ito color palette on dark bg
-Changed 'Replicas' to 'Replicates'
-Changed example data (1 dataset, with improved reference by hyperlink)
-Added function_tidy_f.R for conversion of wide data to tidy data
-Added option to 'convert to tidy' for spreadsheet data, which takes number of lines and optional names for columns
-Added option for continuous x-axis variables
-Improved explanation of data formats
-Improved calculation for differences (now correctly implemented for median)
-Improved styling of p-value (scientific notation for low values)
-Added option to show data distribution by violin plot (instead of dots)
-Option to display stats for conditions (SD or 95CI)
-Improved display of stats for conditions in table (also when no replicates are selected)
-Improved user interface
-Improved display of table with stats summary
-Fixed a bug that crashed the app when data was pasted
-Added notifcations that inform users when (i) majority of replicates is non-normally distributed, (ii) data pairing is selected and (iii) when median is selected to calculate statistics for conditions
-improved/fixed display of 95%CI for conditions
-Improved upload (no need to select file type, this is defined by file extension)
-Added option to download SVG
-Added an explanation for the stats tables
-Improved the explanation of the statistics that are listed on the 'Data summary' tab
-Improved User interface by logical ordering of inputs
-Added option to show data without offset/jitter
-Added option for paired measurements (only allows non-jittered display of data)
-Added several linetypes for pairing of data
-Lines for paired data have the color of the replicate
-If the control has n<3, show a warning (no comparison possible)
-Improved explanation of stats tables

v1.0.1

07 Sep 19:22
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Changes:
-added option to identify replicates by shape
-more/better color options (viridis/greyscale)
-improved code
-modified user interface
-added option for 'classic' dark theme
-updated dark theme
-improved reproducible GUI through URL

v1.0.0

28 Aug 12:50
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First release