Release/518/fix bad version check on db #737
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* example databricks serve notebooks and cluster creation * updated healthcecks * databricks serve + john snow labs endpoints module * `clean_cluster` and `write_db_credentials` parameters for db cluster creation * databricks serve + john snow labs endpoints docs + typo fixes * databricks serve + john snow labs endpoints docs + typo fixes * updated tests * updated tests * fix block_until_deployed bug * fix block_until_deployed bug * support for GPU and nlu.predict params in endpoints * bump versions * Docs update * update notebooks * endpoint test job generator * improved list_db_runtime_versions * multi cluster testing endpoints * Support for submitting notebook to databricks and various utils & refactor to databricks utils * db test refactor into db_info/endpoint/hdfs/submit tests * get_or_create_test_cluster() and varous more db testing utils, pytest.ini and non-verbose parameterization of tests * add docs for notebook execution
* support for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * Docs & example notebook for parameterized run_in_databricks
* support for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * Docs & example notebook for parameterized run_in_databricks * Docs & example notebook for parameterized run_in_databricks * updated noteoboks * support for extra_pip_installs and pandas==1.5.3 fix on new clusters * refactor db cluster creation to install_to_databricks and add deprecation warning to nlp.install() for db clusters * db install tests with custom libs
* Release/513 (#690) * optimized EMR imports for less chance of import errors * bump versions * update release notes * drop deprecated setup.py * Endpoint tests (#637) * example databricks serve notebooks and cluster creation * updated healthcecks * databricks serve + john snow labs endpoints module * `clean_cluster` and `write_db_credentials` parameters for db cluster creation * databricks serve + john snow labs endpoints docs + typo fixes * databricks serve + john snow labs endpoints docs + typo fixes * updated tests * updated tests * fix block_until_deployed bug * fix block_until_deployed bug * support for GPU and nlu.predict params in endpoints * bump versions * Docs update * update notebooks * endpoint test job generator * improved list_db_runtime_versions * multi cluster testing endpoints * Support for submitting notebook to databricks and various utils & refactor to databricks utils * db test refactor into db_info/endpoint/hdfs/submit tests * get_or_create_test_cluster() and varous more db testing utils, pytest.ini and non-verbose parameterization of tests * add docs for notebook execution * bump enterprise nlp version * Update EMR initialization script (#661) * update release notes * update version * Feature/513/parameterized db submit (#684) * support for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * Docs & example notebook for parameterized run_in_databricks * Feature/513/list of additional db installs (#689) * support for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * Docs & example notebook for parameterized run_in_databricks * Docs & example notebook for parameterized run_in_databricks * updated noteoboks * support for extra_pip_installs and pandas==1.5.3 fix on new clusters * refactor db cluster creation to install_to_databricks and add deprecation warning to nlp.install() for db clusters * db install tests with custom libs * Fix update existing databricks cluster (#680) --------- Co-authored-by: Kshitiz <[email protected]> * Release/514 (#691) * optimized EMR imports for less chance of import errors * bump versions * update release notes * drop deprecated setup.py * Endpoint tests (#637) * example databricks serve notebooks and cluster creation * updated healthcecks * databricks serve + john snow labs endpoints module * `clean_cluster` and `write_db_credentials` parameters for db cluster creation * databricks serve + john snow labs endpoints docs + typo fixes * databricks serve + john snow labs endpoints docs + typo fixes * updated tests * updated tests * fix block_until_deployed bug * fix block_until_deployed bug * support for GPU and nlu.predict params in endpoints * bump versions * Docs update * update notebooks * endpoint test job generator * improved list_db_runtime_versions * multi cluster testing endpoints * Support for submitting notebook to databricks and various utils & refactor to databricks utils * db test refactor into db_info/endpoint/hdfs/submit tests * get_or_create_test_cluster() and varous more db testing utils, pytest.ini and non-verbose parameterization of tests * add docs for notebook execution * bump enterprise nlp version * Update EMR initialization script (#661) * update release notes * update version * Feature/513/parameterized db submit (#684) * support for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * Docs & example notebook for parameterized run_in_databricks * Feature/513/list of additional db installs (#689) * support for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * Docs & example notebook for parameterized run_in_databricks * Docs & example notebook for parameterized run_in_databricks * updated noteoboks * support for extra_pip_installs and pandas==1.5.3 fix on new clusters * refactor db cluster creation to install_to_databricks and add deprecation warning to nlp.install() for db clusters * db install tests with custom libs * Fix update existing databricks cluster (#680) * update release notes * bump versions * removed pandas >= 2 htofix --------- Co-authored-by: Kshitiz <[email protected]> * Docs/nlplab541 (#681) * changes for 541 * changes * added images * missed version * changes * changes in git images --------- Co-authored-by: pranab <[email protected]> Co-authored-by: Pranab Rajbhandari <[email protected]> * fastapi_api.py updated (#692) * fix issues (#695) * FEATURE NMH-170: Remove open source posts from johnsnowlabs repo (#694) * Release/515 (#697) * optimized EMR imports for less chance of import errors * bump versions * update release notes * drop deprecated setup.py * Endpoint tests (#637) * example databricks serve notebooks and cluster creation * updated healthcecks * databricks serve + john snow labs endpoints module * `clean_cluster` and `write_db_credentials` parameters for db cluster creation * databricks serve + john snow labs endpoints docs + typo fixes * databricks serve + john snow labs endpoints docs + typo fixes * updated tests * updated tests * fix block_until_deployed bug * fix block_until_deployed bug * support for GPU and nlu.predict params in endpoints * bump versions * Docs update * update notebooks * endpoint test job generator * improved list_db_runtime_versions * multi cluster testing endpoints * Support for submitting notebook to databricks and various utils & refactor to databricks utils * db test refactor into db_info/endpoint/hdfs/submit tests * get_or_create_test_cluster() and varous more db testing utils, pytest.ini and non-verbose parameterization of tests * add docs for notebook execution * bump enterprise nlp version * Update EMR initialization script (#661) * update release notes * update version * Feature/513/parameterized db submit (#684) * support for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * Docs & example notebook for parameterized run_in_databricks * Feature/513/list of additional db installs (#689) * support for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * Docs & example notebook for parameterized run_in_databricks * Docs & example notebook for parameterized run_in_databricks * updated noteoboks * support for extra_pip_installs and pandas==1.5.3 fix on new clusters * refactor db cluster creation to install_to_databricks and add deprecation warning to nlp.install() for db clusters * db install tests with custom libs * Fix update existing databricks cluster (#680) * update release notes * bump versions * removed pandas >= 2 htofix * remove debug print * bump version --------- Co-authored-by: Kshitiz <[email protected]> * Release/516 (#698) * optimized EMR imports for less chance of import errors * bump versions * update release notes * drop deprecated setup.py * Endpoint tests (#637) * example databricks serve notebooks and cluster creation * updated healthcecks * databricks serve + john snow labs endpoints module * `clean_cluster` and `write_db_credentials` parameters for db cluster creation * databricks serve + john snow labs endpoints docs + typo fixes * databricks serve + john snow labs endpoints docs + typo fixes * updated tests * updated tests * fix block_until_deployed bug * fix block_until_deployed bug * support for GPU and nlu.predict params in endpoints * bump versions * Docs update * update notebooks * endpoint test job generator * improved list_db_runtime_versions * multi cluster testing endpoints * Support for submitting notebook to databricks and various utils & refactor to databricks utils * db test refactor into db_info/endpoint/hdfs/submit tests * get_or_create_test_cluster() and varous more db testing utils, pytest.ini and non-verbose parameterization of tests * add docs for notebook execution * bump enterprise nlp version * Update EMR initialization script (#661) * update release notes * update version * Feature/513/parameterized db submit (#684) * support for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * Docs & example notebook for parameterized run_in_databricks * Feature/513/list of additional db installs (#689) * support for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * tests for parameterization of NB sumit runs in run_in_databricks() * Docs & example notebook for parameterized run_in_databricks * Docs & example notebook for parameterized run_in_databricks * updated noteoboks * support for extra_pip_installs and pandas==1.5.3 fix on new clusters * refactor db cluster creation to install_to_databricks and add deprecation warning to nlp.install() for db clusters * db install tests with custom libs * Fix update existing databricks cluster (#680) * update release notes * bump versions * removed pandas >= 2 htofix * remove debug print * bump version * upgrade visual to 502 * bump jsl verison --------- Co-authored-by: Kshitiz <[email protected]> * md file update (#696) * Models hub internal (#706) * 2023-03-29-icd10cm_resolver_pipeline_en (#44) * Add model 2023-03-29-icd10cm_resolver_pipeline_en * Add model 2023-03-29-icd10cm_resolver_pipeline_en --------- Co-authored-by: Ahmetemintek <[email protected]> * 2023-03-29-oncology_general_pipeline_en (#46) * Add model 2023-03-29-oncology_general_pipeline_en * Add model 2023-03-29-oncology_diagnosis_pipeline_en * Add model 2023-03-29-oncology_biomarker_pipeline_en * Add model 2023-03-29-icd10_icd9_mapping_en * Add model 2023-03-29-icd10cm_snomed_mapping_en * Add model 2023-03-29-icd10cm_umls_mapping_en * Add model 2023-03-29-icd9_resolver_pipeline_en * Add model 2023-03-29-icdo_snomed_mapping_en * Add model 2023-03-29-mesh_umls_mapping_en * Add model 2023-03-29-rxnorm_ndc_mapping_en * Add model 2023-03-29-rxnorm_umls_mapping_en * Add model 2023-03-29-snomed_icd10cm_mapping_en * Add model 2023-03-29-snomed_icd10cm_mapping_en * Add model 2023-03-29-snomed_icdo_mapping_en * Add model 2023-03-29-oncology_therapy_pipeline_en * Add model 2023-03-29-snomed_umls_mapping_en --------- Co-authored-by: Cabir40 <[email protected]> * 2023-03-29-icd10cm_resolver_pipeline_en (#45) * Add model 2023-03-29-icd10cm_resolver_pipeline_en * Add model 2023-03-29-umls_drug_resolver_pipeline_en --------- Co-authored-by: Ahmetemintek <[email protected]> * Add model 2023-03-30-text_generator_biomedical_biogpt_en (#48) Co-authored-by: Cabir40 <[email protected]> * 2023-03-30-summarizer_generic_jsl_en (#49) * Add model 2023-03-30-summarizer_generic_jsl_en * Update 2023-03-30-summarizer_generic_jsl_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Add model 2023-03-30-summarizer_clinical_jsl_augmented_en (#51) * Update 2023-03-30-summarizer_generic_jsl_en.md * Update 2023-03-30-text_generator_biomedical_biogpt_en.md * Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md * 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en (#58) * Add model 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en * Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md * Update 2023-04-02-ner_jsl_limited_80p_for_benchmarks_en.md --------- Co-authored-by: Damla-Gurbaz <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: Veysel Kocaman <[email protected]> * 2023-03-30-ner_vop_wip_en (#52) * Add model 2023-03-30-ner_vop_wip_en * Update 2023-03-30-ner_vop_wip_en.md --------- Co-authored-by: mauro-nievoff <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2023-03-30-umls_clinical_findings_resolver_pipeline_en (#47) * Add model 2023-03-30-umls_clinical_findings_resolver_pipeline_en * Add model 2023-03-30-cvx_resolver_pipeline_en * Add model 2023-03-30-umls_disease_syndrome_resolver_pipeline_en * Add model 2023-03-30-umls_major_concepts_resolver_pipeline_en * Add model 2023-03-30-umls_drug_substance_resolver_pipeline_en * Add model 2023-03-31-medication_resolver_pipeline_en * Add model 2023-03-31-medication_resolver_transform_pipeline_en * Add model 2023-03-31-spellcheck_clinical_pipeline_en --------- Co-authored-by: Ahmetemintek <[email protected]> * Add model 2023-04-03-ner_oncology_limited_80p_for_benchmarks_en (#61) * 2023-04-03-text_generator_biomedical_biogpt_base_en (#60) * Delete 2023-03-30-text_generator_biomedical_biogpt_en.md * Update 2023-04-03-text_generator_generic_flan_base_en.md * Update 2023-03-30-summarizer_clinical_jsl_augmented_en.md * Update 2023-03-30-summarizer_generic_jsl_en.md * Add model 2023-04-04-text_generator_generic_flan_t5_large_en (#64) * 2023-04-07-embeddings_clinical_medium_en (#75) * Add model 2023-04-07-embeddings_clinical_medium_en * Update 2023-04-07-embeddings_clinical_medium_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Add model 2023-04-07-embeddings_clinical_large_en (#79) * 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en (#81) * Add model 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en * Add model 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en * Add model 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en * added missing md files * Add model 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en * Delete 2023-04-10-genericclassifier_sdoh_mental_health_embeddings_clinical_en.md * Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md * Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md * Update 2023-04-10-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en.md * Update 2023-04-10-genericclassifier_sdoh_under_treatment_sbiobert_cased_mli_en.md * Update 2023-04-10-genericclassifier_sdoh_mental_health_clinical_en.md --------- Co-authored-by: hsaglamlar <[email protected]> Co-authored-by: Cabir ÇELİK <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2023-04-10-medication_resolver_pipeline_en (#83) * Add model 2023-04-10-medication_resolver_pipeline_en * Add model 2023-04-11-medication_resolver_transform_pipeline_en --------- Co-authored-by: SKocer <[email protected]> * 2023-04-11-umls_clinical_findings_resolver_pipeline_en (#89) * Add model 2023-04-11-umls_clinical_findings_resolver_pipeline_en * Add model 2023-04-11-umls_drug_substance_resolver_pipeline_en --------- Co-authored-by: Cabir40 <[email protected]> * 2023-04-12-ner_vop_emb_clinical_large_wip_en (#100) * Add model 2023-04-12-ner_vop_emb_clinical_large_wip_en * Add model 2023-04-12-ner_vop_emb_clinical_medium_wip_en --------- Co-authored-by: mauro-nievoff <[email protected]> * Add model 2023-04-12-biogpt_chat_jsl_en (#103) Co-authored-by: Cabir40 <[email protected]> * 2023-04-12-ner_oncology_emb_clinical_large_en (#101) * Add model 2023-04-12-ner_oncology_emb_clinical_large_en * Add model 2023-04-12-ner_oncology_emb_clinical_medium_en --------- Co-authored-by: Meryem1425 <[email protected]> * 2023-04-12-ner_posology_emb_clinical_large_en (#99) * Add model 2023-04-12-ner_posology_emb_clinical_large_en * Update 2023-04-12-ner_posology_emb_clinical_large_en.md Fixed the given sample text * Add model 2023-04-12-ner_posology_emb_clinical_medium_en * Update 2023-04-12-ner_posology_emb_clinical_medium_en.md Corrected thr code block view * Add model 2023-04-12-ner_deid_large_emb_clinical_large_en * Update 2023-04-12-ner_deid_large_emb_clinical_large_en.md Corrected the code block view * Add model 2023-04-12-ner_deid_large_emb_clinical_medium_en * Update 2023-04-12-ner_deid_large_emb_clinical_medium_en.md corrected the python code block view * Update 2023-04-12-ner_posology_emb_clinical_medium_en.md Fixed scala code * Update 2023-04-12-ner_posology_emb_clinical_large_en.md Fixed scala code --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2023-04-12-ner_jsl_emb_clinical_medium_en (#98) * Add model 2023-04-12-ner_jsl_emb_clinical_medium_en * Add model 2023-04-12-ner_jsl_emb_clinical_large_en --------- Co-authored-by: Damla-Gurbaz <[email protected]> * 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en (#96) * Add model 2023-04-12-ner_sdoh_emb_clinical_medium_wip_en * Add model 2023-04-12-ner_sdoh_emb_clinical_large_wip_en --------- Co-authored-by: hsaglamlar <[email protected]> * 2023-04-13-ndc_hcpcs_mapper_en (#113) * Add model 2023-04-13-ndc_hcpcs_mapper_en * Add model 2023-04-13-hcpcs_ndc_mapper_en --------- Co-authored-by: Ahmetemintek <[email protected]> * Add model 2023-04-13-medication_resolver_pipeline_en (#110) Co-authored-by: Cabir40 <[email protected]> * Add model 2023-04-17-ner_sdoh_emb_clinical_large_wip_en (#126) * Add model 2023-04-18-biogpt_chat_jsl_conversational_en (#130) Co-authored-by: HashamUlHaq <[email protected]> * 2023-04-20-explain_clinical_doc_medication_en (#140) * Add model 2023-04-20-explain_clinical_doc_medication_en * Add model 2023-04-20-explain_clinical_doc_radiology_en * Add model 2023-04-20-explain_clinical_doc_ade_en * Add model 2023-04-20-explain_clinical_doc_era_en * Add model 2023-04-20-explain_clinical_doc_carp_en --------- Co-authored-by: Cabir40 <[email protected]> * 2023-04-23-summarizer_jsl_radiology_en (#145) * Update 2023-04-23-summarizer_jsl_radiology_en.md * 2023-04-20-ner_vop_anatomy_wip_en (#139) * 2023-04-26-ner_profiling_biobert_en (#151) * 2023-04-27-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#168) * Update 2023-04-23-summarizer_jsl_radiology_en.md * 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en (#170) * Add model 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en * Add model 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en * Add model 2023-04-28-genericclassifier_sdoh_insurance_coverage_sbiobert_cased_mli_en * Update 2023-04-27-genericclassifier_sdoh_insurance_status_sbiobert_cased_mli_en.md * Update 2023-04-28-genericclassifier_sdoh_insurance_type_sbiobert_cased_mli_en.md --------- Co-authored-by: hsaglamlar <[email protected]> Co-authored-by: Halil Saglamlar <[email protected]> * Add model 2023-05-01-bert_token_classifier_ner_jsl_en (#181) Co-authored-by: Damla-Gurbaz <[email protected]> * Add model 2023-04-28-icd10cm_resolver_pipeline_en (#174) Co-authored-by: Meryem1425 <[email protected]> * 2023-04-28-ner_profiling_biobert_en (#171) * Add model 2023-04-28-ner_profiling_biobert_en * Add model 2023-04-28-ner_profiling_clinical_en --------- Co-authored-by: Cabir40 <[email protected]> * Add model 2023-05-02-ner_demographic_extended_en (#187) Co-authored-by: andrei9825 <[email protected]> * Add model 2023-05-04-classifier_logreg_ade_en (#194) Co-authored-by: gpirge <[email protected]> * 2023-05-04-ner_profiling_clinical_en (#196) * Update 2023-05-04-bert_token_classifier_ner_jsl_en.md Add benchmark * fixed typos on 2023-05-04-bert_token_classifier_ner_jsl_en.md * 2023-05-05-ner_clinical_de (#199) * 2023-05-04-classifierml_ade_en (#197) * 2023-05-08-summarizer_clinical_key_facts_en (#201) * Add model 2023-05-08-summarizer_clinical_key_facts_en * Update 2023-05-08-summarizer_clinical_key_facts_en.md changed model name * Update 2023-05-08-summarizer_clinical_key_facts_en.md Changed description --------- Co-authored-by: HashamUlHaq <[email protected]> Co-authored-by: Damla Gurbaz <[email protected]> * renamed md file * 2023-05-09-generic_logreg_classifier_ade_en (#202) * Add model 2023-05-09-generic_logreg_classifier_ade_en * Update 2023-05-09-generic_logreg_classifier_ade_en.md corrected the indentations of the Python codes * Update 2023-05-09-generic_logreg_classifier_ade_en.md changed the title * Add model 2023-05-09-generic_svm_classifier_ade_en --------- Co-authored-by: gpirge <[email protected]> Co-authored-by: gursev.pirge <[email protected]> * Add model 2023-05-08-ner_clinical_de (#200) Co-authored-by: Ahmetemintek <[email protected]> * Add model 2023-05-11-biogpt_chat_jsl_conditions_en (#204) Co-authored-by: HashamUlHaq <[email protected]> * 2023-05-11-classifier_logreg_ade_en (#209) * Add model 2023-05-11-classifier_logreg_ade_en * Add model 2023-05-11-classifierml_ade_en --------- Co-authored-by: gpirge <[email protected]> * 2023-05-12-ner_abbreviation_emb_clinical_medium_en (#214) * Add model 2023-05-12-ner_abbreviation_emb_clinical_medium_en * Add model 2023-05-12-ner_abbreviation_emb_clinical_large_en * Update 2023-05-12-ner_abbreviation_emb_clinical_medium_en.md * Update 2023-05-12-ner_abbreviation_emb_clinical_large_en.md --------- Co-authored-by: Damla-Gurbaz <[email protected]> Co-authored-by: Damla Gurbaz <[email protected]> * 2023-05-11-icd10cm_cause_claim_mapper_en (#210) * Add model 2023-05-11-icd10cm_cause_claim_mapper_en * Update 2023-05-11-icd10cm_cause_claim_mapper_en.md The provided example is updated based on the review. Additional explanation is added for the case where there is no equivalent claim analysis code. * Update 2023-05-11-icd10cm_cause_claim_mapper_en.md * Update 2023-05-11-icd10cm_cause_claim_mapper_en.md * Update 2023-05-11-icd10cm_cause_claim_mapper_en.md * Update 2023-05-11-icd10cm_cause_claim_mapper_en.md The output results are changed. --------- Co-authored-by: SKocer <[email protected]> Co-authored-by: Samed K <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * Add model 2023-05-13-spellcheck_drug_norvig_en (#220) Co-authored-by: Ahmetemintek <[email protected]> * Update 2023-05-08-summarizer_clinical_guidelines_large_en.md * 2023-05-15-ner_anatomy_emb_clinical_medium_en (#225) * Add model 2023-05-15-ner_anatomy_emb_clinical_medium_en * Add model 2023-05-15-ner_anatomy_emb_clinical_large_en * Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md * Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md * Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md * Update 2023-05-15-ner_anatomy_emb_clinical_large_en.md * Update 2023-05-15-ner_anatomy_emb_clinical_medium_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2023-05-15-biogpt_pubmed_qa_en (#227) * Add model 2023-05-15-biogpt_pubmed_qa_en * Update 2023-05-15-biogpt_pubmed_qa_en.md * Add model 2023-05-15-flan_t5_base_jsl_qa_en * Update 2023-05-15-flan_t5_base_jsl_qa_en.md --------- Co-authored-by: Cabir40 <[email protected]> Co-authored-by: Cabir C <[email protected]> * Add model 2023-05-17-medical_qa_biogpt_en (#234) Co-authored-by: Cabir40 <[email protected]> * Update 2023-04-20-explain_clinical_doc_carp_en.md * Update 2023-04-20-explain_clinical_doc_era_en.md * Update 2023-04-20-explain_clinical_doc_carp_en.md * Update 2023-04-28-icd10cm_resolver_pipeline_en.md * Update 2023-05-08-summarizer_clinical_guidelines_large_en.md * 2023-05-20-sbiobertresolve_icd10cm_augmented_en (#243) * Add model 2023-05-20-sbiobertresolve_icd10cm_augmented_en * Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md * Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md * Update 2023-05-20-sbiobertresolve_icd10cm_augmented_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2023-05-21-ner_ade_emb_clinical_medium_en (#244) * Add model 2023-05-21-ner_ade_emb_clinical_medium_en * Add model 2023-05-21-ner_ade_emb_clinical_large_en * Add model 2023-05-24-ner_cellular_emb_clinical_medium_en * Add model 2023-05-24-ner_cellular_emb_clinical_large_en --------- Co-authored-by: Damla-Gurbaz <[email protected]> * 2023-05-23-ner_bacterial_species_emb_clinical_medium_en (#252) * Add model 2023-05-23-ner_bacterial_species_emb_clinical_medium_en * Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md * Add model 2023-05-23-ner_bacterial_species_emb_clinical_large_en * Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md * Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md * Update 2023-05-23-ner_bacterial_species_emb_clinical_large_en.md * Update 2023-05-23-ner_bacterial_species_emb_clinical_medium_en.md --------- Co-authored-by: gokhanturer <[email protected]> Co-authored-by: Gökhan <[email protected]> * 2023-05-19-ner_vop_wip_en (#242) * Add model 2023-05-19-ner_vop_wip_en * Add model 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en * Add model 2023-05-19-ner_vop_wip_embeddings_clinical_large_en * Add model 2023-05-19-ner_vop_anatomy_wip_en * Add model 2023-05-19-ner_vop_clinical_dept_wip_en * Add model 2023-05-19-ner_vop_demographic_wip_en * Add model 2023-05-19-ner_vop_problem_reduced_wip_en * Add model 2023-05-19-ner_vop_problem_wip_en * Add model 2023-05-19-ner_vop_temporal_wip_en * Add model 2023-05-19-ner_vop_test_wip_en * Add model 2023-05-19-ner_vop_treatment_wip_en * Update 2023-05-19-ner_vop_anatomy_wip_en.md Fixing wrong special character ("). * Update 2023-05-19-ner_vop_treatment_wip_en.md Fixing special character (" to '). * Update 2023-05-19-ner_vop_test_wip_en.md Fixing special character (" to '). * Update 2023-05-19-ner_vop_temporal_wip_en.md Special character fix (" to '). * Update 2023-05-19-ner_vop_problem_wip_en.md Special character fix (" to '). * Update 2023-05-19-ner_vop_problem_reduced_wip_en.md Special character fix (" to '). * Update 2023-05-19-ner_vop_demographic_wip_en.md Special character fix (" to '). * Update 2023-05-19-ner_vop_clinical_dept_wip_en.md Adding sample text. * Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md Special character fix (" to '). * Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md Special character fix (" to '). * Update 2023-05-19-ner_vop_wip_en.md Special character fix (" to '). * Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md Changing model name ner_vop_wip_embeddings_clinical_medium to ner_vop_wip_emb_clinical_medium. * Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md Changing model name ner_vop_wip_embeddings_clinical_large to ner_vop_wip_emb_clinical_large. * Update 2023-05-19-ner_vop_wip_embeddings_clinical_medium_en.md Changed s3 link. * Update 2023-05-19-ner_vop_wip_embeddings_clinical_large_en.md Changed s3 link. * Add model 2023-05-24-bert_sequence_classifier_vop_side_effect_en * Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md * Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md Minor edit. * Update 2023-05-24-bert_sequence_classifier_vop_side_effect_en.md Minor edit. --------- Co-authored-by: mauro-nievoff <[email protected]> Co-authored-by: mauro-nievoff <[email protected]> * 2023-05-24-sbiobertresolve_icd10cm_generalised_augmented_en (#256) * 2023-05-29-summarizer_clinical_jsl_pipeline_en (#282) * 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar (#283) * Add model 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar * Update 2023-05-29-arabic_medical_ner_model_specific_17_entities_ar.md * update md file name * Add model 2023-05-30-ner_deid_generic_ar * fixed typos * fixed typos --------- Co-authored-by: mellahysf <[email protected]> Co-authored-by: Cabir C <[email protected]> Co-authored-by: Cabir ÇELİK <[email protected]> * 2023-05-29-summarizer_clinical_layman_en (#280) * Add model 2023-05-29-summarizer_clinical_layman_en * Update 2023-05-29-summarizer_clinical_layman_en.md * update model name * Added English names to the example text --------- Co-authored-by: dcecchini <[email protected]> Co-authored-by: Cabir ÇELİK <[email protected]> * 2023-05-26-icd10cm_billable_hcc_mapper_en (#266) * Add model 2023-05-26-icd10cm_billable_hcc_mapper_en * Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md md file was fixed based on the feedback. * Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> Co-authored-by: muhammetsnts <[email protected]> * 2023-05-16-classifier_logreg_ade_en (#232) * 2023-05-30-genericclassifier_sdoh_housing_insecurity_sbiobert_cased_mli_en (#299) * 2023-05-30-icd10cm_mapper_en (#295) * 2023-05-31-sbiobertresolve_hcc_augmented_en (#304) * Add model 2023-05-31-sbiobertresolve_hcc_augmented_en * Update 2023-05-31-sbiobertresolve_hcc_augmented_en.md --------- Co-authored-by: Ahmetemintek <[email protected]> * 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en (#305) * Add model 2023-05-31-summarizer_clinical_guidelines_large_pipeline_en * Add model 2023-05-31-summarizer_radiology_pipeline_en * Add model 2023-05-31-summarizer_clinical_questions_pipeline_en * Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en * Delete 2023-05-31-summarizer_biomedical_pubmed_pipeline_en.md * Add model 2023-05-31-summarizer_generic_jsl_pipeline_en * Add model 2023-05-31-summarizer_biomedical_pubmed_pipeline_en * Add model 2023-05-31-summarizer_clinical_jsl_augmented_pipeline_en * Add model 2023-05-31-summarizer_clinical_jsl_pipeline_en --------- Co-authored-by: Damla-Gurbaz <[email protected]> Co-authored-by: Damla Gurbaz <[email protected]> * 2023-05-31-sbertresolve_icd10cm_slim_billable_hcc_en (#302) * 2023-05-31-sbertresolve_icd10cm_augmented_en (#306) * Update 2023-05-26-icd10cm_billable_hcc_mapper_en.md * 2023-05-31-ner_deid_subentity_pipeline_ar (#313) * Add model 2023-05-31-ner_deid_subentity_pipeline_ar * Add model 2023-05-31-ner_deid_generic_pipeline_ar --------- Co-authored-by: mellahysf <[email protected]> * 2023-05-31-ner_deid_subentity_pipeline_ar (#313) * Add model 2023-05-31-ner_deid_subentity_pipeline_ar * Add model 2023-05-31-ner_deid_generic_pipeline_ar * Update 2023-05-31-ner_deid_subentity_pipeline_ar.md --------- Co-authored-by: mellahysf <[email protected]> Co-authored-by: Cabir C <[email protected]> * 2023-06-02-ner_chemicals_emb_clinical_large_en (#327) * Add model 2023-06-06-ner_deid_generic_pipeline_ar (#351) * 2023-06-06-ner_vop_en (#350) * Add model 2023-06-08-ner_demographic_extended_healthcare_en (#359) Co-authored-by: Cabir40 <[email protected]> * 2023-06-06-summarizer_clinical_laymen_pipeline_en (#352) * Add model 2023-06-06-summarizer_clinical_laymen_pipeline_en * Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en * Add model 2023-06-06-bert_token_classifier_ner_jsl_pipeline_en * Add model 2023-06-07-bert_token_classifier_ner_jsl_pipeline_en --------- Co-authored-by: Damla-Gurbaz <[email protected]> * Add model 2023-06-11-ner_profiling_biobert_en (#362) Co-authored-by: ahmedlone127 <[email protected]> * 2023-06-09-ner_vop_pipeline_en (#361) * Add model 2023-06-09-ner_vop_pipeline_en * Add model 2023-06-09-ner_vop_anatomy_pipeline_en * Add model 2023-06-10-ner_vop_clinical_dept_pipeline_en * Add model 2023-06-10-ner_vop_demographic_pipeline_en * Add model 2023-06-10-ner_vop_problem_pipeline_en * Add model 2023-06-10-ner_vop_problem_reduced_pipeline_en * Add model 2023-06-10-ner_vop_temporal_pipeline_en * Add model 2023-06-10-ner_vop_test_pipeline_en * Add model 2023-06-10-ner_vop_treatment_pipeline_en --------- Co-authored-by: mauro-nievoff <[email protected]> * Add model 2023-06-13-ner_sdoh_en (#370) Co-authored-by: hsaglamlar <[email protected]> * Add model 2023-06-13-icd10cm_umls_mapping_en (#373) Co-authored-by: C-K-Loan <[email protected]> * 2023-06-13-ner_profiling_biobert_en (#368) * Add model 2023-06-13-ner_profiling_biobert_en * Add model 2023-06-13-explain_clinical_doc_carp_en * Add model 2023-06-13-explain_clinical_doc_era_en * Add model 2023-06-13-snomed_icd10cm_mapping_en * Add model 2023-06-13-icd10cm_umls_mapping_en * Add model 2023-06-13-mesh_umls_mapping_en * Add model 2023-06-13-snomed_umls_mapping_en * Add model 2023-06-13-re_bodypart_directions_pipeline_en * Add model 2023-06-13-icd10_icd9_mapping_en * Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en * Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en * Add model 2023-06-13-re_temporal_events_clinical_pipeline_en * Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en * Add model 2023-06-13-re_test_problem_finding_pipeline_en * Add model 2023-06-13-re_test_result_date_pipeline_en * Add model 2023-06-13-explain_clinical_doc_medication_en * Add model 2023-06-13-icdo_snomed_mapping_en * Add model 2023-06-13-rxnorm_ndc_mapping_en * Add model 2023-06-13-snomed_icdo_mapping_en * Add model 2023-06-13-oncology_general_pipeline_en * Add model 2023-06-13-oncology_biomarker_pipeline_en * Add model 2023-06-13-ner_eu_clinical_condition_pipeline_eu * Add model 2023-06-13-ner_eu_clinical_case_pipeline_en * Add model 2023-06-13-ner_eu_clinical_case_pipeline_es * Add model 2023-06-13-ner_eu_clinical_case_pipeline_eu * Add model 2023-06-13-ner_eu_clinical_case_pipeline_fr * Add model 2023-06-13-ner_eu_clinical_condition_pipeline_es * Add model 2023-06-13-ner_eu_clinical_condition_pipeline_fr * Add model 2023-06-13-ner_eu_clinical_condition_pipeline_it * Add model 2023-06-13-ner_oncology_anatomy_general_healthcare_pipeline_en * Add model 2023-06-13-ner_oncology_anatomy_general_pipeline_en * Add model 2023-06-13-ner_oncology_biomarker_healthcare_pipeline_en * Add model 2023-06-13-ner_oncology_posology_pipeline_en * Add model 2023-06-13-ner_oncology_unspecific_posology_healthcare_pipeline_en * Add model 2023-06-13-ner_sdoh_mentions_pipeline_en * Add model 2023-06-13-ner_clinical_bert_pipeline_ro * Add model 2023-06-13-ner_clinical_pipeline_ro * Add model 2023-06-13-ner_clinical_trials_abstracts_pipeline_es * Add model 2023-06-13-ner_covid_trials_pipeline_en * Add model 2023-06-13-ner_deid_generic_bert_pipeline_ro * Add model 2023-06-13-ner_deid_generic_pipeline_ro * Add model 2023-06-13-ner_deid_subentity_bert_pipeline_ro * Add model 2023-06-13-ner_deid_subentity_pipeline_ro * Add model 2023-06-13-ner_living_species_300_pipeline_es * Add model 2023-06-13-ner_negation_uncertainty_pipeline_es * Add model 2023-06-13-ner_oncology_biomarker_pipeline_en * Add model 2023-06-13-ner_oncology_demographics_pipeline_en * Add model 2023-06-13-ner_oncology_diagnosis_pipeline_en * Add model 2023-06-13-ner_oncology_response_to_treatment_pipeline_en * Add model 2023-06-13-ner_oncology_test_pipeline_en * Add model 2023-06-13-ner_oncology_therapy_pipeline_en * Add model 2023-06-13-ner_oncology_tnm_pipeline_en * Add model 2023-06-13-ner_oncology_unspecific_posology_pipeline_en * Add model 2023-06-13-ner_pharmacology_pipeline_es * Add model 2023-06-13-ner_deid_generic_glove_pipeline_en * Add model 2023-06-13-ner_deid_generic_pipeline_it * Add model 2023-06-13-ner_deid_subentity_glove_pipeline_en * Add model 2023-06-13-ner_deid_subentity_pipeline_it * Add model 2023-06-13-ner_deid_synthetic_pipeline_en * Add model 2023-06-13-ner_living_species_bert_pipeline_es * Add model 2023-06-13-ner_living_species_bert_pipeline_fr * Add model 2023-06-13-ner_living_species_bert_pipeline_it * Add model 2023-06-13-ner_living_species_bert_pipeline_pt * Add model 2023-06-13-ner_living_species_bert_pipeline_ro * Add model 2023-06-13-ner_living_species_pipeline_ca * Add model 2023-06-13-ner_living_species_pipeline_en * Add model 2023-06-13-ner_living_species_pipeline_es * Add model 2023-06-13-ner_living_species_pipeline_fr * Add model 2023-06-13-ner_living_species_pipeline_gl * Add model 2023-06-13-ner_living_species_pipeline_it * Add model 2023-06-13-ner_living_species_pipeline_pt * Add model 2023-06-13-ner_living_species_roberta_pipeline_es * Add model 2023-06-13-ner_living_species_roberta_pipeline_pt * Add model 2023-06-13-ner_chemd_clinical_pipeline_en * Add model 2023-06-13-ner_nature_nero_clinical_pipeline_en * Add model 2023-06-13-ner_supplement_clinical_pipeline_en * Add model 2023-06-13-nerdl_tumour_demo_pipeline_en * Add model 2023-06-13-ner_diag_proc_pipeline_es * Add model 2023-06-13-ner_healthcare_pipeline_de * Add model 2023-06-13-ner_healthcare_slim_pipeline_de * Add model 2023-06-13-ner_neoplasms_pipeline_es * Add model 2023-06-13-bert_token_classifier_ade_tweet_binary_pipeline_en * Add model 2023-06-13-bert_token_classifier_negation_uncertainty_pipeline_es * Add model 2023-06-13-bert_token_classifier_ner_ade_binary_pipeline_en * Add model 2023-06-13-bert_token_classifier_disease_mentions_tweet_pipeline_es * Add model 2023-06-13-bert_token_classifier_ner_anatem_pipeline_en * Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en * Add model 2023-06-13-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en * Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en * Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_es * Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_en * Add model 2023-06-13-bert_token_classifier_ner_bc2gm_gene_pipeline_en * Add model 2023-06-13-bert_token_classifier_ner_linnaeus_species_pipeline_en * Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_pt * Add model 2023-06-13-bert_token_classifier_ner_jnlpba_cellular_pipeline_en * Add model 2023-06-13-ner_living_species_biobert_pipeline_en * Add model 2023-06-13-bert_token_classifier_pharmacology_pipeline_es * Add model 2023-06-13-bert_token_classifier_ner_species_pipeline_en * Add model 2023-06-13-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es * Add model 2023-06-13-bert_token_classifier_ner_bc5cdr_disease_pipeline_en * Add model 2023-06-13-bert_token_classifier_ner_living_species_pipeline_it * Add model 2023-06-13-bert_token_classifier_ner_pathogen_pipeline_en * Add model 2023-06-13-bert_token_classifier_ner_ncbi_disease_pipeline_en --------- Co-authored-by: ahmedlone127 <[email protected]> * 2023-06-13-ner_profiling_biobert_en (#375) * Add model 2023-06-13-ner_profiling_biobert_en * Add model 2023-06-13-snomed_icd10cm_mapping_en * Add model 2023-06-13-recognize_entities_posology_en * Add model 2023-06-13-icd10cm_umls_mapping_en * Add model 2023-06-13-mesh_umls_mapping_en * Add model 2023-06-13-clinical_deidentification_de * Add model 2023-06-13-rxnorm_mesh_mapping_en * Add model 2023-06-13-clinical_deidentification_augmented_es * Add model 2023-06-13-clinical_deidentification_es * Add model 2023-06-13-clinical_deidentification_glove_en * Add model 2023-06-13-clinical_deidentification_fr * Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en * Add model 2023-06-13-snomed_umls_mapping_en * Add model 2023-06-13-rxnorm_umls_mapping_en * Add model 2023-06-13-icd10_icd9_mapping_en * Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en * Add model 2023-06-13-clinical_deidentification_it * Add model 2023-06-13-re_bodypart_directions_pipeline_en * Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en * Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en * Add model 2023-06-13-re_temporal_events_clinical_pipeline_en * Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en * Add model 2023-06-13-re_test_problem_finding_pipeline_en * Add model 2023-06-13-re_test_result_date_pipeline_en * Add model 2023-06-13-clinical_deidentification_pt * Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en * Add model 2023-06-13-icd10cm_snomed_mapping_en * Add model 2023-06-13-icdo_snomed_mapping_en * Add model 2023-06-13-rxnorm_ndc_mapping_en * Add model 2023-06-13-clinical_deidentification_ro * Add model 2023-06-13-clinical_deidentification_slim_en * Add model 2023-06-13-ner_medication_pipeline_en * Add model 2023-06-13-snomed_icdo_mapping_en * Add model 2023-06-13-ner_deid_subentity_pipeline_ar --------- Co-authored-by: C-K-Loan <[email protected]> * 2023-06-13-bert_sequence_classifier_vop_drug_side_effect_en (#376) * Add model 2023-06-14-clinical_deidentification_ar (#382) * 2023-06-13-recognize_entities_posology_en (#378) * Add model 2023-06-13-recognize_entities_posology_en * Add model 2023-06-13-snomed_icd10cm_mapping_en * Add model 2023-06-13-icd10cm_umls_mapping_en * Add model 2023-06-13-mesh_umls_mapping_en * Add model 2023-06-13-clinical_deidentification_de * Add model 2023-06-13-clinical_deidentification_es * Add model 2023-06-13-snomed_umls_mapping_en * Add model 2023-06-13-rxnorm_umls_mapping_en * Add model 2023-06-13-clinical_deidentification_glove_en * Add model 2023-06-13-ner_deid_generic_augmented_pipeline_en * Add model 2023-06-13-clinical_deidentification_fr * Add model 2023-06-13-icd10_icd9_mapping_en * Add model 2023-06-13-bert_token_classifier_ner_jsl_pipeline_en * Add model 2023-06-13-clinical_deidentification_augmented_es * Add model 2023-06-13-rxnorm_mesh_mapping_en * Add model 2023-06-13-re_bodypart_directions_pipeline_en * Add model 2023-06-13-clinical_deidentification_it * Add model 2023-06-13-re_bodypart_proceduretest_pipeline_en * Add model 2023-06-13-re_human_phenotype_gene_clinical_pipeline_en * Add model 2023-06-13-re_temporal_events_clinical_pipeline_en * Add model 2023-06-13-re_temporal_events_enriched_clinical_pipeline_en * Add model 2023-06-13-re_test_problem_finding_pipeline_en * Add model 2023-06-13-re_test_result_date_pipeline_en * Add model 2023-06-13-clinical_deidentification_pt * Add model 2023-06-13-bert_sequence_classifier_binary_rct_biobert_pipeline_en * Add model 2023-06-13-icd10cm_snomed_mapping_en * Add model 2023-06-13-icdo_snomed_mapping_en * Add model 2023-06-13-rxnorm_ndc_mapping_en * Add model 2023-06-13-clinical_deidentification_ro * Add model 2023-06-13-clinical_deidentification_slim_en * Add model 2023-06-13-ner_medication_pipeline_en * Add model 2023-06-13-snomed_icdo_mapping_en * Add model 2023-06-13-ner_deid_subentity_pipeline_ar --------- Co-authored-by: Cabir40 <[email protected]> * 2023-06-13-bert_sequence_classifier_vop_side_effect_pipeline_en (#380) * Add model 2023-06-15-ner_profiling_biobert_en (#397) Co-authored-by: ahmedlone127 <[email protected]> * Add model 2023-06-16-ner_profiling_biobert_en (#399) Co-authored-by: ahmedlone127 <[email protected]> * Add model 2023-06-16-ner_profiling_biobert_en (#400) Co-authored-by: Cabir40 <[email protected]> * 2023-06-16-ner_profiling_biobert_en (#401) * Add model 2023-06-16-ner_profiling_biobert_en * Add model 2023-06-16-clinical_deidentification_en * Add model 2023-06-16-explain_clinical_doc_carp_en * Add model 2023-06-16-explain_clinical_doc_era_en * Add model 2023-06-16-recognize_entities_posology_en * Add model 2023-06-16-explain_clinical_doc_ade_en * Add model 2023-06-16-snomed_icd10cm_mapping_en * Add model 2023-06-16-snomed_umls_mapping_en * Add model 2023-06-16-mesh_umls_mapping_en * Add model 2023-06-16-clinical_deidentification_de * Add model 2023-06-16-clinical_deidentification_es * Add model 2023-06-16-rxnorm_umls_mapping_en * Add model 2023-06-16-rxnorm_mesh_mapping_en * Add model 2023-06-16-icd10_icd9_mapping_en * Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en * Add model 2023-06-16-icd10cm_umls_mapping_en * Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en --------- Co-authored-by: ahmedlone127 <[email protected]> * 2023-06-16-clinical_deidentification_fr (#403) * Add model 2023-06-16-clinical_deidentification_fr * Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en * Add model 2023-06-16-clinical_deidentification_augmented_es * Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en * Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en * Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en * Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en * Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en * Add model 2023-06-16-clinical_deidentification_glove_en * Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en * Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en * Add model 2023-06-16-ner_ade_biobert_pipeline_en * Add model 2023-06-16-ner_ade_clinical_pipeline_en * Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en * Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en * Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en * Add model 2023-06-16-ner_anatomy_biobert_pipeline_en * Add model 2023-06-16-ner_anatomy_coarse_pipeline_en * Add model 2023-06-16-ner_anatomy_pipeline_en * Add model 2023-06-16-ner_bacterial_species_pipeline_en * Add model 2023-06-16-ner_biomarker_pipeline_en * Add model 2023-06-16-ner_bionlp_biobert_pipeline_en * Add model 2023-06-16-ner_bionlp_pipeline_en * Add model 2023-06-16-ner_cancer_genetics_pipeline_en * Add model 2023-06-16-ner_cellular_biobert_pipeline_en * Add model 2023-06-16-ner_cellular_pipeline_en * Add model 2023-06-16-ner_chemicals_pipeline_en * Add model 2023-06-16-ner_chemprot_biobert_pipeline_en * Add model 2023-06-16-ner_chemprot_clinical_pipeline_en * Add model 2023-06-16-ner_chexpert_pipeline_en * Add model 2023-06-16-ner_clinical_biobert_pipeline_en * Add model 2023-06-16-ner_clinical_large_pipeline_en * Add model 2023-06-16-ner_clinical_pipeline_en * Add model 2023-06-16-ner_deid_augmented_pipeline_en * Add model 2023-06-16-ner_deid_biobert_pipeline_en * Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en * Add model 2023-06-16-ner_deid_enriched_pipeline_en * Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en * Add model 2023-06-16-ner_deid_generic_pipeline_de * Add model 2023-06-16-ner_deid_large_pipeline_en * Add model 2023-06-16-ner_deid_sd_large_pipeline_en * Add model 2023-06-16-ner_deid_sd_pipeline_en * Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en * Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en * Add model 2023-06-16-ner_deid_subentity_pipeline_de * Add model 2023-06-16-ner_deidentify_dl_pipeline_en * Add model 2023-06-16-ner_diseases_biobert_pipeline_en * Add model 2023-06-16-ner_diseases_large_pipeline_en * Add model 2023-06-16-ner_diseases_pipeline_en * Add model 2023-06-16-ner_drugprot_clinical_pipeline_en * Add model 2023-06-16-ner_drugs_greedy_pipeline_en * Add model 2023-06-16-ner_drugs_large_pipeline_en * Add model 2023-06-16-ner_drugs_pipeline_en * Add model 2023-06-16-ner_events_admission_clinical_pipeline_en * Add model 2023-06-16-ner_events_biobert_pipeline_en * Add model 2023-06-16-ner_events_clinical_pipeline_en * Add model 2023-06-16-ner_genetic_variants_pipeline_en * Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en * Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en * Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en * Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en * Add model 2023-06-16-ner_jsl_biobert_pipeline_en * Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en * Add model 2023-06-16-ner_jsl_enriched_pipeline_en * Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en * Add model 2023-06-16-ner_jsl_greedy_pipeline_en * Add model 2023-06-16-ner_jsl_pipeline_en * Add model 2023-06-16-ner_jsl_slim_pipeline_en * Add model 2023-06-16-ner_measurements_clinical_pipeline_en * Add model 2023-06-16-ner_medmentions_coarse_pipeline_en * Add model 2023-06-16-ner_nihss_pipeline_en * Add model 2023-06-16-ner_posology_biobert_pipeline_en * Add model 2023-06-16-ner_posology_experimental_pipeline_en * Add model 2023-06-16-ner_posology_greedy_pipeline_en * Add model 2023-06-16-ner_posology_large_biobert_pipeline_en * Add model 2023-06-16-ner_posology_large_pipeline_en * Add model 2023-06-16-ner_posology_pipeline_en * Add model 2023-06-16-ner_posology_small_pipeline_en * Add model 2023-06-16-ner_radiology_pipeline_en * Add model 2023-06-16-ner_radiology_wip_clinical_pipeline_en * Add model 2023-06-16-ner_risk_factors_biobert_pipeline_en * Add model 2023-06-16-ner_risk_factors_pipeline_en * Add model 2023-06-16-clinical_deidentification_glove_augmented_en * Add model 2023-06-16-ner_events_healthcare_pipeline_en * Add model 2023-06-16-ner_ade_healthcare_pipeline_en * Add model 2023-06-16-ner_healthcare_pipeline_en * Add model 2023-06-16-ner_posology_healthcare_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_jsl_pipeline_en * Add model 2023-06-16-bert_token_classifier_drug_development_trials_pipeline_en * Add model 2023-06-16-clinical_deidentification_it * Add model 2023-06-16-explain_clinical_doc_radiology_en * Add model 2023-06-16-re_bodypart_directions_pipeline_en * Add model 2023-06-16-re_bodypart_proceduretest_pipeline_en * Add model 2023-06-16-re_human_phenotype_gene_clinical_pipeline_en * Add model 2023-06-16-re_temporal_events_clinical_pipeline_en * Add model 2023-06-16-re_temporal_events_enriched_clinical_pipeline_en * Add model 2023-06-16-re_test_problem_finding_pipeline_en * Add model 2023-06-16-re_test_result_date_pipeline_en * Add model 2023-06-16-explain_clinical_doc_medication_en * Add model 2023-06-16-spellcheck_clinical_pipeline_en * Add model 2023-06-16-clinical_deidentification_pt * Add model 2023-06-16-bert_sequence_classifier_binary_rct_biobert_pipeline_en * Add model 2023-06-16-ner_biomedical_bc2gm_pipeline_en * Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_en * Add model 2023-06-16-icd10cm_snomed_mapping_en * Add model 2023-06-16-icdo_snomed_mapping_en * Add model 2023-06-16-rxnorm_ndc_mapping_en * Add model 2023-06-16-clinical_deidentification_ro * Add model 2023-06-16-snomed_icdo_mapping_en * Add model 2023-06-16-ner_pathogen_pipeline_en * Add model 2023-06-16-clinical_deidentification_wip_en * Add model 2023-06-16-clinical_deidentification_slim_en * Add model 2023-06-16-ner_medication_pipeline_en * Add model 2023-06-16-oncology_general_pipeline_en * Add model 2023-06-16-oncology_biomarker_pipeline_en * Add model 2023-06-16-oncology_therapy_pipeline_en * Add model 2023-06-16-ner_eu_clinical_condition_pipeline_en * Add model 2023-06-16-ner_eu_clinical_condition_pipeline_eu * Add model 2023-06-16-ner_eu_clinical_case_pipeline_en * Add model 2023-06-16-ner_eu_clinical_case_pipeline_es * Add model 2023-06-16-ner_eu_clinical_case_pipeline_eu * Add model 2023-06-16-ner_eu_clinical_case_pipeline_fr * Add model 2023-06-16-ner_eu_clinical_condition_pipeline_es * Add model 2023-06-16-ner_eu_clinical_condition_pipeline_fr * Add model 2023-06-16-ner_eu_clinical_condition_pipeline_it * Add model 2023-06-16-ner_oncology_anatomy_general_healthcare_pipeline_en * Add model 2023-06-16-ner_oncology_anatomy_general_pipeline_en * Add model 2023-06-16-ner_oncology_biomarker_healthcare_pipeline_en * Add model 2023-06-16-ner_oncology_posology_pipeline_en * Add model 2023-06-16-ner_oncology_unspecific_posology_healthcare_pipeline_en * Add model 2023-06-16-ner_sdoh_mentions_pipeline_en * Add model 2023-06-16-ner_clinical_bert_pipeline_ro * Add model 2023-06-16-ner_clinical_pipeline_ro * Add model 2023-06-16-ner_clinical_trials_abstracts_pipeline_es * Add model 2023-06-16-ner_covid_trials_pipeline_en * Add model 2023-06-16-ner_deid_generic_bert_pipeline_ro * Add model 2023-06-16-ner_deid_generic_pipeline_ro * Add model 2023-06-16-ner_deid_subentity_bert_pipeline_ro * Add model 2023-06-16-ner_deid_subentity_pipeline_ro * Add model 2023-06-16-ner_living_species_300_pipeline_es * Add model 2023-06-16-ner_negation_uncertainty_pipeline_es * Add model 2023-06-16-ner_oncology_biomarker_pipeline_en * Add model 2023-06-16-ner_oncology_demographics_pipeline_en * Add model 2023-06-16-ner_oncology_diagnosis_pipeline_en * Add model 2023-06-16-ner_oncology_response_to_treatment_pipeline_en * Add model 2023-06-16-ner_oncology_test_pipeline_en * Add model 2023-06-16-ner_oncology_therapy_pipeline_en * Add model 2023-06-16-ner_oncology_tnm_pipeline_en * Add model 2023-06-16-ner_oncology_unspecific_posology_pipeline_en * Add model 2023-06-16-ner_pharmacology_pipeline_es * Add model 2023-06-16-ner_deid_generic_glove_pipeline_en * Add model 2023-06-16-ner_deid_generic_pipeline_it * Add model 2023-06-16-ner_deid_subentity_glove_pipeline_en * Add model 2023-06-16-ner_deid_subentity_pipeline_it * Add model 2023-06-16-ner_deid_synthetic_pipeline_en * Add model 2023-06-16-ner_living_species_bert_pipeline_es * Add model 2023-06-16-ner_living_species_bert_pipeline_fr * Add model 2023-06-16-ner_living_species_bert_pipeline_it * Add model 2023-06-16-ner_living_species_bert_pipeline_pt * Add model 2023-06-16-ner_living_species_bert_pipeline_ro * Add model 2023-06-16-ner_living_species_pipeline_ca * Add model 2023-06-16-ner_living_species_pipeline_en * Add model 2023-06-16-ner_living_species_pipeline_es * Add model 2023-06-16-ner_living_species_pipeline_fr * Add model 2023-06-16-ner_living_species_pipeline_gl * Add model 2023-06-16-ner_living_species_pipeline_it * Add model 2023-06-16-ner_living_species_pipeline_pt * Add model 2023-06-16-ner_living_species_roberta_pipeline_es * Add model 2023-06-16-ner_living_species_roberta_pipeline_pt * Add model 2023-06-16-ner_chemd_clinical_pipeline_en * Add model 2023-06-16-ner_nature_nero_clinical_pipeline_en * Add model 2023-06-16-ner_supplement_clinical_pipeline_en * Add model 2023-06-16-nerdl_tumour_demo_pipeline_en * Add model 2023-06-16-ner_diag_proc_pipeline_es * Add model 2023-06-16-ner_healthcare_pipeline_de * Add model 2023-06-16-ner_healthcare_slim_pipeline_de * Add model 2023-06-16-ner_neoplasms_pipeline_es * Add model 2023-06-16-bert_token_classifier_ade_tweet_binary_pipeline_en * Add model 2023-06-16-bert_token_classifier_disease_mentions_tweet_pipeline_es * Add model 2023-06-16-bert_token_classifier_ner_ade_binary_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_anatem_pipeline_en * Add model 2023-06-16-bert_token_classifier_negation_uncertainty_pipeline_es * Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_jnlpba_cellular_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_it * Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_pt * Add model 2023-06-16-bert_token_classifier_ner_ncbi_disease_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_clinical_trials_abstracts_pipeline_es * Add model 2023-06-16-bert_token_classifier_ner_species_pipeline_en * Add model 2023-06-16-bert_token_classifier_pharmacology_pipeline_es * Add model 2023-06-16-bert_token_classifier_ner_linnaeus_species_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_chemicals_pipeline_en * Add model 2023-06-16-ner_living_species_biobert_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_bc5cdr_disease_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_bc4chemd_chemicals_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_pathogen_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_living_species_pipeline_es * Add model 2023-06-16-bert_token_classifier_ner_bc2gm_gene_pipeline_en * Add model 2023-06-16-ner_deid_subentity_pipeline_ar * Add model 2023-06-16-ner_deid_generic_pipeline_ar --------- Co-authored-by: ahmedlone127 <[email protected]> * 2023-06-16-ner_profiling_biobert_en (#406) * Add model 2023-06-16-ner_profiling_biobert_en * Add model 2023-06-16-clinical_deidentification_en * Add model 2023-06-16-explain_clinical_doc_carp_en * Add model 2023-06-16-explain_clinical_doc_era_en * Add model 2023-06-16-recognize_entities_posology_en * Add model 2023-06-16-explain_clinical_doc_ade_en * Add model 2023-06-16-snomed_icd10cm_mapping_en * Add model 2023-06-16-icd10_icd9_mapping_en * Add model 2023-06-16-mesh_umls_mapping_en * Add model 2023-06-16-icd10cm_umls_mapping_en * Add model 2023-06-16-clinical_deidentification_glove_en * Add model 2023-06-16-clinical_deidentification_augmented_es * Add model 2023-06-16-clinical_deidentification_es * Add model 2023-06-16-clinical_deidentification_fr * Add model 2023-06-16-bert_token_classifier_ner_chemicals_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_chemprot_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_ade_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_clinical_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_bionlp_pipeline_en * Add model 2023-06-16-snomed_umls_mapping_en * Add model 2023-06-16-bert_token_classifier_ner_jsl_slim_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_bacteria_pipeline_en * Add model 2023-06-16-jsl_ner_wip_clinical_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_deid_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_cellular_pipeline_en * Add model 2023-06-16-clinical_deidentification_de * Add model 2023-06-16-jsl_ner_wip_greedy_biobert_pipeline_en * Add model 2023-06-16-rxnorm_mesh_mapping_en * Add model 2023-06-16-jsl_ner_wip_modifier_clinical_pipeline_en * Add model 2023-06-16-jsl_rd_ner_wip_greedy_clinical_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_drugs_pipeline_en * Add model 2023-06-16-rxnorm_umls_mapping_en * Add model 2023-06-16-ner_abbreviation_clinical_pipeline_en * Add model 2023-06-16-ner_ade_biobert_pipeline_en * Add model 2023-06-16-bert_token_classifier_ner_anatomy_pipeline_en * Add model 2023-06-16-jsl_rd_ner_wip_greedy_biobert_pipeline_en * Add model 2023-06-16-ner_anatomy_biobert_pipeline_en * Add model 2023-06-16-jsl_ner_wip_greedy_clinical_pipeline_en * Add model 2023-06-16-ner_ade_clinical_pipeline_en * Add model 2023-06-16-ner_ade_clinicalbert_pipeline_en * Add model 2023-06-16-ner_anatomy_coarse_pipeline_en * Add model 2023-06-16-ner_anatomy_coarse_biobert_pipeline_en * Add model 2023-06-16-ner_anatomy_pipeline_en * Add model 2023-06-16-ner_bacterial_species_pipeline_en * Add model 2023-06-16-ner_biomarker_pipeline_en * Add model 2023-06-16-ner_bionlp_biobert_pipeline_en * Add model 2023-06-16-ner_bionlp_pipeline_en * Add model 2023-06-16-ner_cancer_genetics_pipeline_en * Add model 2023-06-16-ner_cellular_biobert_pipeline_en * Add model 2023-06-16-ner_cellular_pipeline_en * Add model 2023-06-16-ner_chemicals_pipeline_en * Add model 2023-06-16-ner_chemprot_biobert_pipeline_en * Add model 2023-06-16-ner_chemprot_clinical_pipeline_en * Add model 2023-06-16-ner_chexpert_pipeline_en * Add model 2023-06-16-ner_clinical_biobert_pipeline_en * Add model 2023-06-16-ner_clinical_large_pipeline_en * Add model 2023-06-16-ner_clinical_pipeline_en * Add model 2023-06-16-ner_deid_augmented_pipeline_en * Add model 2023-06-16-ner_deid_biobert_pipeline_en * Add model 2023-06-16-ner_deid_enriched_biobert_pipeline_en * Add model 2023-06-16-ner_deid_enriched_pipeline_en * Add model 2023-06-16-ner_deid_generic_augmented_pipeline_en * Add model 2023-06-16-ner_deid_generic_pipeline_de * Add model 2023-06-16-ner_deid_large_pipeline_en * Add model 2023-06-16-ner_deid_sd_large_pipeline_en * Add model 2023-06-16-ner_deid_sd_pipeline_en * Add model 2023-06-16-ner_deid_subentity_augmented_i2b2_pipeline_en * Add model 2023-06-16-ner_deid_subentity_augmented_pipeline_en * Add model 2023-06-16-ner_deid_subentity_pipeline_de * Add model 2023-06-16-ner_deidentify_dl_pipeline_en * Add model 2023-06-16-ner_diseases_biobert_pipeline_en * Add model 2023-06-16-ner_diseases_large_pipeline_en * Add model 2023-06-16-ner_diseases_pipeline_en * Add model 2023-06-16-ner_drugprot_clinical_pipeline_en * Add model 2023-06-16-ner_drugs_greedy_pipeline_en * Add model 2023-06-16-ner_drugs_large_pipeline_en * Add model 2023-06-16-ner_drugs_pipeline_en * Add model 2023-06-16-ner_events_admission_clinical_pipeline_en * Add model 2023-06-16-ner_events_biobert_pipeline_en * Add model 2023-06-16-ner_events_clinical_pipeline_en * Add model 2023-06-16-ner_genetic_variants_pipeline_en * Add model 2023-06-16-ner_human_phenotype_gene_biobert_pipeline_en * Add model 2023-06-16-ner_human_phenotype_gene_clinical_pipeline_en * Add model 2023-06-16-ner_human_phenotype_go_biobert_pipeline_en * Add model 2023-06-16-ner_human_phenotype_go_clinical_pipeline_en * Add model 2023-06-16-ner_jsl_biobert_pipeline_en * Add model 2023-06-16-ner_jsl_enriched_biobert_pipeline_en * Add model 2023-06-16-ner_jsl_enriched_pipeline_en * Add model 2023-06-16-ner_jsl_greedy_biobert_pipeline_en * Add model 2023-06-16-ne…
* bump version and docs * workload_type param in nlp.query_and_deploy_if_missing() and UC edge case handling * Docs for gpu workload type
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