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CRG
- Barcelona
- https://orcid.org/0000-0002-1541-042X
Stars
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Stochastic Testing and Input Manipulation for Unbiased Learning Systems
A collection of snippets to use for nf-test assertions
Aggregate results from bioinformatics analyses across many samples into a single report.
nf-core pipeline for comparative analysis of ortholog predictions
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
nf-core/datasync is a system operation pipeline that provides several workflows for handling system operation / automation tasks
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as tβ¦
A playground to explore how to implement things in Nextflow and nf-core
A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.
MARS-seq v2 pre-processing pipeline with velocity
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
nextflow-io / nf-validation
Forked from nextflow-io/nf-schemaParams validation plugin for Nextflow pipelines
Instructions and scripts for custom GitHub Actions runners
ATAC-seq peak-calling and QC analysis pipeline
nf-core / tower-action
Forked from ewels/tower-actionGitHub Action to launch a workflow using Nextflow Tower.
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed annotation.
ChIP-seq peak-calling, QC and differential analysis pipeline.
Agent app that allows connecting remote batch schedulers to Tower Cloud
A collection of unexpected challenges and learnings with nextflow and nf-core.
Making Protein folding accessible to all!
A RNA-seq differential expression analysis pipeline downstream of nf-core/rnaseq.
Testing building mulled containers for multi-requirement tools.
DSL2 NextFlow wrapped CAGE-Seq analysis pipeline from demultiplexing to base pair resolution read counting (i.e. compatible import to CAGEfightR)