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sqlite gnomAD v4.1 #31

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Apr 27, 2024
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sqlite gnomAD v4.1 #31

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8 changes: 7 additions & 1 deletion README.md
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Expand Up @@ -4,7 +4,11 @@

#### Changelog

#### NEW version (November 2023)
#### NEW version (April 2024)
- release gnomAD WGS v4.1 and WES v4.1
- More information [here](https://gnomad.broadinstitute.org/news/2024-04-gnomad-v4-1/).

#### version (November 2023)
- release gnomAD WGS v4.0 and WES v4.0
- `gnomad_version`=["v2"|"v3"|"v4"] argument has to be specified when initializing the database
- minor fixes
Expand Down Expand Up @@ -33,6 +37,8 @@ It extracts from a gnomAD vcf about 23 variant annotations. You can find further

I have preprocessed and created sqlite3 files for gnomAD for you, which can be easily downloaded from here. They contain all variants on the 24 standard chromosomes.

- WGS gnomAD v4.1 (hg38, **759'336'320** variants) 44.3G zipped, 91G in total - https://zenodo.org/records/11077663/files/gnomad_db.sqlite3.gz?download=1
- WES gnomAD v4.1 (hg38, **183'558'769** variants) 8.3G zipped, 19G in total - https://zenodo.org/records/11076395/files/gnomad_db.sqlite3.gz?download=1
- WGS gnomAD v4.0 (hg38, **759'336'320** variants) 44.3G zipped, 91G in total - https://zenodo.org/records/10453271/files/gnomad_db_wgs_v4.0.sqlite3.gz?download=1
- WES gnomAD v4.0 (hg38, **183'558'769** variants) 8.3G zipped, 19G in total - https://zenodo.org/records/10455901/files/gnomad_db_wes_v4.0.sqlite3.gz?download=1
- WGS gnomAD v3.1.2 (hg38, **759'302'267** variants) 46.2G zipped, 98G in total - https://zenodo.org/record/6818606/files/gnomad_db_v3.1.2.sqlite3.gz?download=1
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