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uptick version+tag v1.6.5
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KasperSkytte committed Nov 30, 2021
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Expand Up @@ -97,7 +97,7 @@ Type `bash autotax.bash -h` to show available options and version:
```
$ bash autotax.bash -h
Pipeline for extracting Full-length 16S rRNA Amplicon Sequence Variants (FL-ASVs) from full length 16S rRNA gene DNA sequences and generating de novo taxonomy
Version: 1.6.4
Version: 1.6.5
Options:
-h Display this help text and exit.
-i Input FASTA file with full length DNA sequences to process (required).
Expand All @@ -124,7 +124,7 @@ To run AutoTax through a docker container first install [Docker Engine - Communi
docker pull ghcr.io/kasperskytte/autotax:main
```

Alternatively build the image manually from the git repo. You can also use a specific (and locked) image to ensure complete reproducibilty by using semver tags instead of just pulling the latest image from the `main` branch every time, for instance: `ghcr.io/kasperskytte/autotax:v1.6.3`.
Alternatively build the image manually from the git repo. You can also use a specific (and locked) image to ensure complete reproducibilty by using semver tags instead of just pulling the latest image from the `main` branch every time, for instance: `ghcr.io/kasperskytte/autotax:v1.6.5`.

The image also contains the autotax git repository itself (most recent from main branch) located at `/opt/autotax/`. Now run AutoTax with the current working directory mounted inside the container at `/autotax`:
```
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