use top_srcdir

Kingsford-Group · Apr 11, 2020 · 6e2cd7a · 6e2cd7a
1 parent ba4cbee
commit 6e2cd7a
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Showing 7 changed files with 13 additions and 13 deletions.
diff --git a/gtfalign/Makefile.am b/gtfalign/Makefile.am
@@ -1,7 +1,7 @@
 bin_PROGRAMS=gtfalign
 
-gtfalign_CPPFLAGS = -I../lib/gtf
-gtfalign_LDFLAGS = -L../lib/gtf
+gtfalign_CPPFLAGS = -I$(top_srcdir)/lib/gtf
+gtfalign_LDFLAGS = -L$(top_srcdir)/lib/gtf
 gtfalign_LDADD = -lgtf
 
 gtfalign_SOURCES = genome1.h genome1.cc \

diff --git a/gtfcuff/Makefile.am b/gtfcuff/Makefile.am
@@ -1,7 +1,7 @@
 bin_PROGRAMS=gtfcuff
 
-gtfcuff_CPPFLAGS = -I../lib/gtf
-gtfcuff_LDFLAGS = -L../lib/gtf
+gtfcuff_CPPFLAGS = -I$(top_srcdir)/lib/gtf
+gtfcuff_LDFLAGS = -L$(top_srcdir)/lib/gtf
 gtfcuff_LDADD = -lgtf
 
 gtfcuff_SOURCES = gtfcuff.h gtfcuff.cc \

diff --git a/gtfformat/Makefile.am b/gtfformat/Makefile.am
@@ -1,7 +1,7 @@
 bin_PROGRAMS=gtfformat
 
-gtfformat_CPPFLAGS = -I../lib/gtf
-gtfformat_LDFLAGS = -L../lib/gtf
+gtfformat_CPPFLAGS = -I$(top_srcdir)/lib/gtf
+gtfformat_LDFLAGS = -L$(top_srcdir)/lib/gtf
 gtfformat_LDADD = -lgtf
 
 gtfformat_SOURCES = main.cc \

diff --git a/gtfmerge/Makefile.am b/gtfmerge/Makefile.am
@@ -1,7 +1,7 @@
 bin_PROGRAMS=gtfmerge
 
-gtfmerge_CPPFLAGS = -pthread -I../lib/gtf -std=c++11
-gtfmerge_LDFLAGS = -L../lib/gtf -pthread
+gtfmerge_CPPFLAGS = -pthread -I$(top_srcdir)/lib/gtf -std=c++11
+gtfmerge_LDFLAGS = -L$(top_srcdir)/lib/gtf -pthread
 gtfmerge_LDADD = -lgtf
 
 gtfmerge_SOURCES = genome1.h genome1.cc \

diff --git a/gtfquant/Makefile.am b/gtfquant/Makefile.am
@@ -1,7 +1,7 @@
 bin_PROGRAMS=gtfquant
 
-gtfquant_CPPFLAGS = -I../lib/gtf
-gtfquant_LDFLAGS = -L../lib/gtf
+gtfquant_CPPFLAGS = -I$(top_srcdir)/lib/gtf
+gtfquant_LDFLAGS = -L$(top_srcdir)/lib/gtf
 gtfquant_LDADD = -lgtf
 
 gtfquant_SOURCES = gtfquant.h gtfquant.cc \

diff --git a/gtfsimulator/Makefile.am b/gtfsimulator/Makefile.am
@@ -1,7 +1,7 @@
 bin_PROGRAMS=gtfsimulator
 
-gtfsimulator_CPPFLAGS = -I../lib/gtf -I../lib/util
-gtfsimulator_LDFLAGS = -L../lib/gtf -L../lib/util
+gtfsimulator_CPPFLAGS = -I$(top_srcdir)/lib/gtf -I$(top_srcdir)/lib/util
+gtfsimulator_LDFLAGS = -L$(top_srcdir)/lib/gtf -L$(top_srcdir)/lib/util
 gtfsimulator_LDADD = -lgtf -lutil
 
 gtfsimulator_SOURCES = main.cc \

diff --git a/lib/gtf/Makefile.am b/lib/gtf/Makefile.am
@@ -1,6 +1,6 @@
 noinst_LIBRARIES = libgtf.a
 
-UTILDIR = ../util
+UTILDIR = $(top_srcdir)/lib/util
 
 libgtf_a_CPPFLAGS = -I$(UTILDIR)