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Added pinned versions to docker build. Should make it faster.
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,26 +1,24 @@ | ||
| FROM continuumio/miniconda3:4.10.3 | ||
| FROM continuumio/miniconda3:23.5.2-0 | ||
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| RUN conda install -y numpy pip scipy astropy pytest mock requests ipython coverage pyyaml\ | ||
| && conda install -y -c conda-forge kombu=4.4.0 elasticsearch\<6.0.0,\>=5.0.0 pytest-astropy mysql-connector-python\ | ||
| && conda clean -y --all | ||
|
|
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| RUN pip install --no-cache-dir photutils bottleneck cython logutils lcogt_logging python-dateutil sqlalchemy\>=1.3.0b1 psycopg2-binary \ | ||
| celery[redis]==4.3.0 apscheduler ocs-ingester tenacity amqp==2.6.0 cosmic-conn | ||
| # In principle I could remove the gcc to shrink the image, but pytorch is already so large it doesn't make much difference | ||
| RUN apt-get -y update && apt-get -y install gcc && \ | ||
| apt-get autoclean && \ | ||
| rm -rf /var/lib/apt/lists/* | ||
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||
| RUN mkdir /home/archive && /usr/sbin/groupadd -g 10000 "domainusers" \ | ||
| && /usr/sbin/useradd -g 10000 -d /home/archive -M -N -u 10087 archive \ | ||
| && chown -R archive:domainusers /home/archive | ||
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| COPY --chown=10087:10000 . /lco/banzai | ||
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| RUN apt-get -y update && apt-get -y install gcc && \ | ||
| pip install --no-cache-dir /lco/banzai/ && \ | ||
| apt-get -y remove gcc && \ | ||
| apt-get autoclean && \ | ||
| rm -rf /var/lib/apt/lists/* | ||
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| USER archive | ||
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||
| ENV HOME /home/archive | ||
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| WORKDIR /home/archive | ||
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| COPY environment.yaml . | ||
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| RUN . /opt/conda/etc/profile.d/conda.sh && conda env create -p /home/archive/envs/banzai -f environment.yaml --solver=libmamba && conda activate /home/archive/envs/banzai | ||
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| COPY --chown=10087:10000 . /lco/banzai | ||
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| RUN /home/archive/envs/banzai/bin/pip install --no-cache-dir /lco/banzai/ |
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| @@ -0,0 +1,323 @@ | ||
| channels: | ||
| - pytorch | ||
| - conda-forge | ||
| - defaults | ||
| dependencies: | ||
| - _libgcc_mutex=0.1=conda_forge | ||
| - _openmp_mutex=4.5=2_kmp_llvm | ||
| - affine=2.4.0=pyhd8ed1ab_0 | ||
| - amqp=2.6.1=pyh9f0ad1d_0 | ||
| - anyio=4.0.0=pyhd8ed1ab_0 | ||
| - aom=3.6.1=h59595ed_0 | ||
| - apscheduler=3.10.4=pyhd8ed1ab_0 | ||
| - asdf=2.15.1=pyhd8ed1ab_0 | ||
| - asdf-astropy=0.4.0=pyhd8ed1ab_1 | ||
| - asdf-coordinates-schemas=0.2.0=pyhd8ed1ab_1 | ||
| - asdf-standard=1.0.3=pyhd8ed1ab_0 | ||
| - asdf-transform-schemas=0.3.0=pyhd8ed1ab_0 | ||
| - asdf-unit-schemas=0.1.0=pyhd8ed1ab_0 | ||
| - asdf-wcs-schemas=0.1.1=pyhd8ed1ab_0 | ||
| - astropy=5.3.4=py311h1f0f07a_2 | ||
| - asttokens=2.4.0=pyhd8ed1ab_0 | ||
| - attrs=23.1.0=pyh71513ae_1 | ||
| - backcall=0.2.0=pyh9f0ad1d_0 | ||
| - backports=1.0=pyhd8ed1ab_3 | ||
| - backports.functools_lru_cache=1.6.5=pyhd8ed1ab_0 | ||
| - backports.zoneinfo=0.2.1=py311h38be061_8 | ||
| - billiard=3.6.4.0=py311hd4cff14_3 | ||
| - blas=2.116=mkl | ||
| - blas-devel=3.9.0=16_linux64_mkl | ||
| - blosc=1.21.5=h0f2a231_0 | ||
| - bottleneck=1.3.7=py311h1f0f07a_1 | ||
| - brotli=1.1.0=hd590300_1 | ||
| - brotli-bin=1.1.0=hd590300_1 | ||
| - brotli-python=1.1.0=py311hb755f60_1 | ||
| - brunsli=0.1=h9c3ff4c_0 | ||
| - bzip2=1.0.8=h7f98852_4 | ||
| - c-ares=1.20.1=hd590300_0 | ||
| - c-blosc2=2.10.5=hb4ffafa_0 | ||
| - ca-certificates=2023.7.22=hbcca054_0 | ||
| - cairo=1.18.0=h3faef2a_0 | ||
| - celery=4.4.0=py_0 | ||
| - certifi=2023.7.22=pyhd8ed1ab_0 | ||
| - cffi=1.16.0=py311hb3a22ac_0 | ||
| - cfitsio=4.3.0=hbdc6101_0 | ||
| - charls=2.4.2=h59595ed_0 | ||
| - charset-normalizer=3.3.0=pyhd8ed1ab_0 | ||
| - click=8.1.7=unix_pyh707e725_0 | ||
| - click-plugins=1.1.1=py_0 | ||
| - cligj=0.7.2=pyhd8ed1ab_1 | ||
| - colorama=0.4.6=pyhd8ed1ab_0 | ||
| - contourpy=1.1.1=py311h9547e67_1 | ||
| - coverage=7.3.2=py311h459d7ec_0 | ||
| - cryptography=41.0.4=py311h63ff55d_0 | ||
| - cycler=0.12.1=pyhd8ed1ab_0 | ||
| - cython=0.29.36=py311hb755f60_1 | ||
| - dav1d=1.2.1=hd590300_0 | ||
| - decorator=5.1.1=pyhd8ed1ab_0 | ||
| - dnspython=2.4.2=pyhd8ed1ab_0 | ||
| - elasticsearch=5.5.3=pyh9f0ad1d_0 | ||
| - emcee=3.1.4=pyhd8ed1ab_0 | ||
| - exceptiongroup=1.1.3=pyhd8ed1ab_0 | ||
| - executing=1.2.0=pyhd8ed1ab_0 | ||
| - expat=2.5.0=hcb278e6_1 | ||
| - filelock=3.12.4=pyhd8ed1ab_0 | ||
| - font-ttf-dejavu-sans-mono=2.37=hab24e00_0 | ||
| - font-ttf-inconsolata=3.000=h77eed37_0 | ||
| - font-ttf-source-code-pro=2.038=h77eed37_0 | ||
| - font-ttf-ubuntu=0.83=hab24e00_0 | ||
| - fontconfig=2.14.2=h14ed4e7_0 | ||
| - fonts-conda-ecosystem=1=0 | ||
| - fonts-conda-forge=1=0 | ||
| - fonttools=4.43.1=py311h459d7ec_0 | ||
| - freetype=2.12.1=h267a509_2 | ||
| - freexl=2.0.0=h743c826_0 | ||
| - geos=3.12.0=h59595ed_0 | ||
| - geotiff=1.7.1=hee599c5_13 | ||
| - gettext=0.21.1=h27087fc_0 | ||
| - giflib=5.2.1=h0b41bf4_3 | ||
| - gmp=6.2.1=h58526e2_0 | ||
| - gmpy2=2.1.2=py311h6a5fa03_1 | ||
| - greenlet=3.0.0=py311hb755f60_1 | ||
| - gwcs=0.19.0=pyhd8ed1ab_0 | ||
| - h11=0.14.0=pyhd8ed1ab_0 | ||
| - h2=4.1.0=pyhd8ed1ab_0 | ||
| - hdf4=4.2.15=h501b40f_6 | ||
| - hdf5=1.14.2=nompi_h4f84152_100 | ||
| - hpack=4.0.0=pyh9f0ad1d_0 | ||
| - httpcore=1.0.0=pyhd8ed1ab_0 | ||
| - hyperframe=6.0.1=pyhd8ed1ab_0 | ||
| - hypothesis=6.87.3=pyha770c72_0 | ||
| - icu=73.2=h59595ed_0 | ||
| - idna=3.4=pyhd8ed1ab_0 | ||
| - imagecodecs=2023.9.18=py311h9b38416_0 | ||
| - imageio=2.31.5=pyh8c1a49c_0 | ||
| - importlib-metadata=6.8.0=pyha770c72_0 | ||
| - importlib-resources=6.1.0=pyhd8ed1ab_0 | ||
| - importlib_resources=6.1.0=pyhd8ed1ab_0 | ||
| - iniconfig=2.0.0=pyhd8ed1ab_0 | ||
| - ipython=8.16.1=pyh0d859eb_0 | ||
| - jedi=0.19.1=pyhd8ed1ab_0 | ||
| - jinja2=3.1.2=pyhd8ed1ab_1 | ||
| - jmespath=1.0.1=pyhd8ed1ab_0 | ||
| - joblib=1.3.2=pyhd8ed1ab_0 | ||
| - json-c=0.17=h7ab15ed_0 | ||
| - jsonschema=4.19.1=pyhd8ed1ab_0 | ||
| - jsonschema-specifications=2023.7.1=pyhd8ed1ab_0 | ||
| - jxrlib=1.1=h7f98852_2 | ||
| - kealib=1.5.2=hcd42e92_1 | ||
| - keyutils=1.6.1=h166bdaf_0 | ||
| - kiwisolver=1.4.5=py311h9547e67_1 | ||
| - krb5=1.21.2=h659d440_0 | ||
| - lazy_loader=0.3=pyhd8ed1ab_0 | ||
| - lcms2=2.15=h7f713cb_2 | ||
| - ld_impl_linux-64=2.40=h41732ed_0 | ||
| - lerc=4.0.0=h27087fc_0 | ||
| - libaec=1.1.2=h59595ed_1 | ||
| - libarchive=3.7.2=h039dbb9_0 | ||
| - libavif16=1.0.1=h87da1f6_2 | ||
| - libblas=3.9.0=16_linux64_mkl | ||
| - libboost-headers=1.82.0=ha770c72_6 | ||
| - libbrotlicommon=1.1.0=hd590300_1 | ||
| - libbrotlidec=1.1.0=hd590300_1 | ||
| - libbrotlienc=1.1.0=hd590300_1 | ||
| - libcblas=3.9.0=16_linux64_mkl | ||
| - libcurl=8.4.0=hca28451_0 | ||
| - libdeflate=1.19=hd590300_0 | ||
| - libedit=3.1.20191231=he28a2e2_2 | ||
| - libev=4.33=h516909a_1 | ||
| - libexpat=2.5.0=hcb278e6_1 | ||
| - libffi=3.4.2=h7f98852_5 | ||
| - libgcc-ng=13.2.0=h807b86a_2 | ||
| - libgdal=3.7.2=h3aa23ec_3 | ||
| - libgfortran-ng=13.2.0=h69a702a_2 | ||
| - libgfortran5=13.2.0=ha4646dd_2 | ||
| - libglib=2.78.0=hebfc3b9_0 | ||
| - libhwloc=2.9.3=default_h554bfaf_1009 | ||
| - libiconv=1.17=h166bdaf_0 | ||
| - libjpeg-turbo=2.1.5.1=hd590300_1 | ||
| - libkml=1.3.0=h01aab08_1018 | ||
| - liblapack=3.9.0=16_linux64_mkl | ||
| - liblapacke=3.9.0=16_linux64_mkl | ||
| - libnetcdf=4.9.2=nompi_h80fb2b6_112 | ||
| - libnghttp2=1.52.0=h61bc06f_0 | ||
| - libnsl=2.0.0=hd590300_1 | ||
| - libpng=1.6.39=h753d276_0 | ||
| - libpq=15.4=hfc447b1_2 | ||
| - libprotobuf=3.20.3=h3eb15da_0 | ||
| - librttopo=1.1.0=hb58d41b_14 | ||
| - libspatialite=5.1.0=h090f1da_0 | ||
| - libsqlite=3.43.2=h2797004_0 | ||
| - libssh2=1.11.0=h0841786_0 | ||
| - libstdcxx-ng=13.2.0=h7e041cc_2 | ||
| - libtiff=4.6.0=h29866fb_1 | ||
| - libuuid=2.38.1=h0b41bf4_0 | ||
| - libwebp-base=1.3.2=hd590300_0 | ||
| - libxcb=1.15=h0b41bf4_0 | ||
| - libxml2=2.11.5=h232c23b_1 | ||
| - libzip=1.10.1=h2629f0a_3 | ||
| - libzlib=1.2.13=hd590300_5 | ||
| - libzopfli=1.0.3=h9c3ff4c_0 | ||
| - llvm-openmp=15.0.7=h0cdce71_0 | ||
| - lz4-c=1.9.4=hcb278e6_0 | ||
| - lzo=2.10=h516909a_1000 | ||
| - markupsafe=2.1.3=py311h459d7ec_1 | ||
| - matplotlib-base=3.8.0=py311h54ef318_2 | ||
| - matplotlib-inline=0.1.6=pyhd8ed1ab_0 | ||
| - minizip=4.0.1=h0ab5242_5 | ||
| - mkl=2022.1.0=h84fe81f_915 | ||
| - mkl-devel=2022.1.0=ha770c72_916 | ||
| - mkl-include=2022.1.0=h84fe81f_915 | ||
| - mock=5.1.0=pyhd8ed1ab_0 | ||
| - mpc=1.3.1=hfe3b2da_0 | ||
| - mpfr=4.2.0=hb012696_0 | ||
| - mpmath=1.3.0=pyhd8ed1ab_0 | ||
| - munkres=1.1.4=pyh9f0ad1d_0 | ||
| - mysql-common=8.0.33=hf1915f5_5 | ||
| - mysql-connector-python=8.0.32=py311h381d6c5_0 | ||
| - mysql-libs=8.0.33=hca2cd23_5 | ||
| - ncurses=6.4=hcb278e6_0 | ||
| - networkx=3.1=pyhd8ed1ab_0 | ||
| - nspr=4.35=h27087fc_0 | ||
| - nss=3.94=h1d7d5a4_0 | ||
| - numpy=1.23.5=py311h7d28db0_0 | ||
| - openjpeg=2.5.0=h488ebb8_3 | ||
| - openssl=3.1.3=hd590300_0 | ||
| - packaging=23.2=pyhd8ed1ab_0 | ||
| - parso=0.8.3=pyhd8ed1ab_0 | ||
| - pcre2=10.40=hc3806b6_0 | ||
| - pexpect=4.8.0=pyh1a96a4e_2 | ||
| - photutils=1.9.0=py311h459d7ec_0 | ||
| - pickleshare=0.7.5=py_1003 | ||
| - pillow=10.0.1=py311h8aef010_1 | ||
| - pip=23.2.1=pyhd8ed1ab_0 | ||
| - pixman=0.42.2=h59595ed_0 | ||
| - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1 | ||
| - pluggy=1.3.0=pyhd8ed1ab_0 | ||
| - poppler=23.08.0=hf2349cb_2 | ||
| - poppler-data=0.4.12=hd8ed1ab_0 | ||
| - postgresql=15.4=h8972f4a_2 | ||
| - proj=9.3.0=h1d62c97_1 | ||
| - prompt-toolkit=3.0.39=pyha770c72_0 | ||
| - prompt_toolkit=3.0.39=hd8ed1ab_0 | ||
| - protobuf=3.20.3=py311hcafe171_1 | ||
| - psutil=5.9.5=py311h459d7ec_1 | ||
| - psycopg2=2.9.7=py311h68d4568_0 | ||
| - psycopg2-binary=2.9.7=pyhd8ed1ab_0 | ||
| - pthread-stubs=0.4=h36c2ea0_1001 | ||
| - ptyprocess=0.7.0=pyhd3deb0d_0 | ||
| - pure_eval=0.2.2=pyhd8ed1ab_0 | ||
| - pycparser=2.21=pyhd8ed1ab_0 | ||
| - pyerfa=2.0.0.3=py311h1f0f07a_1 | ||
| - pygments=2.16.1=pyhd8ed1ab_0 | ||
| - pyparsing=3.1.1=pyhd8ed1ab_0 | ||
| - pysocks=1.7.1=pyha2e5f31_6 | ||
| - pytest=7.4.2=pyhd8ed1ab_0 | ||
| - pytest-arraydiff=0.5.0=pyhd8ed1ab_0 | ||
| - pytest-astropy=0.10.0=pyhd8ed1ab_0 | ||
| - pytest-astropy-header=0.2.2=pyhd8ed1ab_0 | ||
| - pytest-cov=4.1.0=pyhd8ed1ab_0 | ||
| - pytest-doctestplus=1.0.0=pyhd8ed1ab_0 | ||
| - pytest-filter-subpackage=0.1.2=pyhd8ed1ab_0 | ||
| - pytest-mock=3.11.1=pyhd8ed1ab_0 | ||
| - pytest-openfiles=0.5.0=py_0 | ||
| - pytest-remotedata=0.4.1=pyhd8ed1ab_0 | ||
| - python=3.11.6=hab00c5b_0_cpython | ||
| - python-dateutil=2.8.2=pyhd8ed1ab_0 | ||
| - python_abi=3.11=4_cp311 | ||
| - pytorch=2.1.0=py3.11_cpu_0 | ||
| - pytorch-mutex=1.0=cpu | ||
| - pytz=2023.3.post1=pyhd8ed1ab_0 | ||
| - pywavelets=1.4.1=py311h1f0f07a_1 | ||
| - pyyaml=6.0.1=py311h459d7ec_1 | ||
| - rasterio=1.3.8=py311h40fbdff_3 | ||
| - rav1e=0.6.6=he8a937b_2 | ||
| - readline=8.2=h8228510_1 | ||
| - referencing=0.30.2=pyhd8ed1ab_0 | ||
| - requests=2.31.0=pyhd8ed1ab_0 | ||
| - rpds-py=0.10.4=py311h46250e7_0 | ||
| - scikit-image=0.22.0=py311h320fe9a_2 | ||
| - scikit-learn=1.3.1=py311hc009520_1 | ||
| - scipy=1.11.3=py311h64a7726_1 | ||
| - semantic_version=2.10.0=pyhd8ed1ab_0 | ||
| - sep=1.2.1=py311h1f0f07a_2 | ||
| - setuptools=68.2.2=pyhd8ed1ab_0 | ||
| - shapely=2.0.1=py311he06c224_3 | ||
| - simplejson=3.19.2=py311h459d7ec_0 | ||
| - six=1.16.0=pyh6c4a22f_0 | ||
| - snappy=1.1.10=h9fff704_0 | ||
| - sniffio=1.3.0=pyhd8ed1ab_0 | ||
| - snuggs=1.4.7=py_0 | ||
| - sortedcontainers=2.4.0=pyhd8ed1ab_0 | ||
| - sqlalchemy=2.0.21=py311h459d7ec_1 | ||
| - sqlite=3.43.2=h2c6b66d_0 | ||
| - stack_data=0.6.2=pyhd8ed1ab_0 | ||
| - svt-av1=1.7.0=h59595ed_0 | ||
| - sympy=1.12=pypyh9d50eac_103 | ||
| - tbb=2021.10.0=h00ab1b0_1 | ||
| - tenacity=8.2.3=pyhd8ed1ab_0 | ||
| - threadpoolctl=3.2.0=pyha21a80b_0 | ||
| - tifffile=2023.9.26=pyhd8ed1ab_0 | ||
| - tiledb=2.16.3=hf0b6e87_3 | ||
| - tk=8.6.13=h2797004_0 | ||
| - toml=0.10.2=pyhd8ed1ab_0 | ||
| - tomli=2.0.1=pyhd8ed1ab_0 | ||
| - tqdm=4.66.1=pyhd8ed1ab_0 | ||
| - traitlets=5.11.2=pyhd8ed1ab_0 | ||
| - typing-extensions=4.8.0=hd8ed1ab_0 | ||
| - typing_extensions=4.8.0=pyha770c72_0 | ||
| - tzcode=2023c=h0b41bf4_0 | ||
| - tzdata=2023c=h71feb2d_0 | ||
| - tzlocal=5.1=py311h38be061_0 | ||
| - uriparser=0.9.7=hcb278e6_1 | ||
| - wcwidth=0.2.8=pyhd8ed1ab_0 | ||
| - wheel=0.41.2=pyhd8ed1ab_0 | ||
| - xerces-c=3.2.4=hac6953d_3 | ||
| - xorg-kbproto=1.0.7=h7f98852_1002 | ||
| - xorg-libice=1.1.1=hd590300_0 | ||
| - xorg-libsm=1.2.4=h7391055_0 | ||
| - xorg-libx11=1.8.6=h8ee46fc_0 | ||
| - xorg-libxau=1.0.11=hd590300_0 | ||
| - xorg-libxdmcp=1.1.3=h7f98852_0 | ||
| - xorg-libxext=1.3.4=h0b41bf4_2 | ||
| - xorg-libxrender=0.9.11=hd590300_0 | ||
| - xorg-renderproto=0.11.1=h7f98852_1002 | ||
| - xorg-xextproto=7.3.0=h0b41bf4_1003 | ||
| - xorg-xproto=7.0.31=h7f98852_1007 | ||
| - xz=5.2.6=h166bdaf_0 | ||
| - yaml=0.2.5=h7f98852_2 | ||
| - zfp=1.0.0=h59595ed_4 | ||
| - zipp=3.17.0=pyhd8ed1ab_0 | ||
| - zlib=1.2.13=hd590300_5 | ||
| - zlib-ng=2.0.7=h0b41bf4_0 | ||
| - zstd=1.5.5=hfc55251_0 | ||
| - pip: | ||
| - asciitree==0.3.3 | ||
| - astropy-healpix==1.0.0 | ||
| - boto3==1.28.62 | ||
| - botocore==1.31.62 | ||
| - cloudpickle==2.2.1 | ||
| - cosmic-conn==0.4.1 | ||
| - dask==2023.9.3 | ||
| - fasteners==0.19 | ||
| - fsspec==2023.9.2 | ||
| - kombu==4.6.11 | ||
| - lcogt-logging==0.3.2 | ||
| - locket==1.0.0 | ||
| - logutils==0.3.5 | ||
| - numcodecs==0.12.0 | ||
| - ocs-archive==0.2.10 | ||
| - ocs-ingester==3.0.5 | ||
| - opensearch-py==1.1.0 | ||
| - opentsdb-http-client==0.2.0 | ||
| - opentsdb-python-metrics==0.2.0 | ||
| - partd==1.4.1 | ||
| - pretty-errors==1.2.25 | ||
| - redis==5.0.1 | ||
| - reproject==0.12.0 | ||
| - s3transfer==0.7.0 | ||
| - toolz==0.12.0 | ||
| - urllib3==1.26.17 | ||
| - vine==1.3.0 | ||
| - zarr==2.16.1 | ||
| prefix: /root/micromamba/envs/banzai |
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