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Merge pull request #372 from CamStan/master
Merge dev branch into master for release 0.9.0 TEST_CHECKPATCH_ALLOW_FAILURE=yes
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,132 @@ | ||
| stages: | ||
| - build | ||
| - test-unit | ||
| - test-integ | ||
|
|
||
| cache: | ||
| paths: | ||
| - spack_ci/ | ||
|
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||
| ##### Templates ##### | ||
|
|
||
| .quartz-template: &quartz_template | ||
| tags: | ||
| - quartz | ||
| - shell | ||
| variables: | ||
| LLNL_SERVICE_USER: "unifysrv" | ||
| retry: | ||
| max: 1 | ||
| when: | ||
| - unknown_failure | ||
| - stuck_or_timeout_failure | ||
|
|
||
| .butte-template: &butte_template | ||
| tags: | ||
| - butte | ||
| - shell | ||
| variables: | ||
| LLNL_SERVICE_USER: "unifysrv" | ||
| retry: | ||
| max: 1 | ||
| when: | ||
| - unknown_failure | ||
| - stuck_or_timeout_failure | ||
|
|
||
| .build-template: &build_template | ||
| stage: build | ||
| script: | ||
| - ./autogen.sh | ||
| - mkdir -p unifyfs-build unifyfs-install && cd unifyfs-build | ||
| - ../configure --prefix=$CI_PROJECT_DIR/unifyfs-install --enable-fortran --disable-silent-rules | ||
| - make V=1 | ||
| - make V=1 install | ||
| artifacts: | ||
| name: "${CI_JOB_NAME}-${CI_PIPELINE_ID}" | ||
| untracked: true | ||
| expire_in: 1 hour | ||
| paths: | ||
| - unifyfs-build/ | ||
| - unifyfs-install/ | ||
|
|
||
| .unit-test-template: &unit_test_template | ||
| stage: test-unit | ||
| script: | ||
| - cd unifyfs-build/t && make check | ||
| after_script: | ||
| - rm -rf /tmp/unify* /tmp/tmp.* /tmp/mdhim* /tmp/na_sm | ||
|
|
||
| .quartz-batch-variables: | ||
| variables: &quartz_batch_variables | ||
| LLNL_SLURM_SCHEDULER_PARAMETERS: "-N $NNODES -p pbatch -t $WALL_TIME" | ||
| LLNL_SERVICE_USER: "unifysrv" | ||
| CI_PROJDIR: "$CI_PROJECT_DIR" | ||
| UNIFYFS_INSTALL: "$CI_PROJECT_DIR/unifyfs-install" | ||
| CI_NPROCS: "$NPROCS" | ||
|
|
||
| .butte-batch-variables: | ||
| variables: &butte_batch_variables | ||
| LLNL_LSF_SCHEDULER_PARAMETERS: "-nnodes $NNODES -q pbatch -W $WALL_TIME" | ||
| LLNL_SERVICE_USER: "unifysrv" | ||
| CI_PROJDIR: "$CI_PROJECT_DIR" | ||
| UNIFYFS_INSTALL: "$CI_PROJECT_DIR/unifyfs-install" | ||
| CI_NPROCS: "$NPROCS" | ||
|
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||
| ##### Jobs ##### | ||
|
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||
| before_script: | ||
| # HERE BE DRAGONS!: Since on HPC and running as user, Spack might already | ||
| # exist and can get complicated if we install it again. | ||
| # | ||
| # check for sourced spack || check for unsourced spack in $HOME/spack and | ||
| # source it || check for cached spack, clone if none, and source it | ||
| - which spack || ((cd $HOME/spack && git describe) && . $HOME/spack/share/spack/setup-env.sh) || (((cd spack_ci && git describe) || git clone https://github.com/CamStan/spack spack_ci) && . spack_ci/share/spack/setup-env.sh) | ||
| - SPACK_ARCH=$(spack arch) | ||
| - spack install leveldb && spack load leveldb arch=$SPACK_ARCH | ||
| - spack install [email protected] && spack load [email protected] arch=$SPACK_ARCH | ||
| - spack install flatcc && spack load flatcc arch=$SPACK_ARCH | ||
| - spack install margo^mercury+bmi~boostsys && spack load argobots arch=$SPACK_ARCH && spack load mercury arch=$SPACK_ARCH && spack load margo arch=$SPACK_ARCH | ||
|
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||
| build-quartz: | ||
| <<: *quartz_template | ||
| <<: *build_template | ||
|
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||
| build-butte: | ||
| <<: *butte_template | ||
| <<: *build_template | ||
|
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| unit-test-quartz: | ||
| <<: *quartz_template | ||
| <<: *unit_test_template | ||
| dependencies: | ||
| - build-quartz | ||
|
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||
| unit-test-butte: | ||
| <<: *butte_template | ||
| <<: *unit_test_template | ||
| dependencies: | ||
| - build-butte | ||
|
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||
| #integ-test-quartz: | ||
| # <<: *quartz_template | ||
| # stage: test-integ | ||
| # tags: | ||
| # - quartz | ||
| # - batch | ||
| # variables: *quartz_batch_variables | ||
| # script: | ||
| # - cd t/ci && prove -v RUN_CI_TESTS.sh | ||
| # dependencies: | ||
| # - build-quartz | ||
|
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||
| integ-test-butte: | ||
| <<: *butte_template | ||
| stage: test-integ | ||
| tags: | ||
| - butte | ||
| - batch | ||
| variables: *butte_batch_variables | ||
| script: | ||
| - cd t/ci && prove -v RUN_CI_TESTS.sh | ||
| dependencies: | ||
| - build-butte |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,27 +1,61 @@ | ||
| language: c | ||
| sudo: required | ||
| dist: xenial | ||
|
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||
| addons: | ||
| apt: | ||
| update: true | ||
| packages: | ||
| - autoconf | ||
| - automake | ||
| - build-essential | ||
| - cmake | ||
| - gfortran | ||
| - libhdf5-openmpi-dev | ||
| - libopenmpi-dev | ||
| - libtool-bin | ||
| - m4 | ||
| - openmpi-bin | ||
|
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||
| before_install: | ||
| # The default environment variable $CC is known to interfere with | ||
| # MPI projects. | ||
| - test -n $CC && unset CC | ||
| - sudo apt-get -qq update | ||
| - sudo apt-get install --yes -qq build-essential autoconf libtool cmake | ||
| - sudo apt-get install --yes -qq libopenmpi-dev openmpi-bin | ||
| - sudo apt-get install --yes -qq libhdf5-openmpi-dev | ||
| - (cd $HOME/spack; git describe) || git clone https://github.com/spack/spack $HOME/spack | ||
| # Create packages.yaml to prevent building dependencies that time out | ||
| - | | ||
| test -f $HOME/spack/etc/spack/packages.yaml || cat > $HOME/spack/etc/spack/packages.yaml << ' EOF' | ||
| packages: | ||
| autoconf: | ||
| buildable: False | ||
| paths: | ||
| [email protected]: /usr | ||
| automake: | ||
| buildable: False | ||
| paths: | ||
| [email protected]: /usr | ||
| cmake: | ||
| buildable: False | ||
| paths: | ||
| [email protected]: /usr/local/cmake-3.12.4 | ||
| libtool: | ||
| buildable: False | ||
| paths: | ||
| [email protected]: /usr | ||
| m4: | ||
| buildable: False | ||
| paths: | ||
| [email protected]: /usr | ||
| EOF | ||
| install: | ||
| - $HOME/spack/bin/spack install environment-modules | ||
| - $HOME/spack/bin/spack install leveldb | ||
| - $HOME/spack/bin/spack install [email protected] | ||
| - $HOME/spack/bin/spack install flatcc | ||
| # insall margo with spack | ||
| - git config --global http.sslVerify false | ||
| - git clone https://xgitlab.cels.anl.gov/sds/sds-repo.git $HOME/sds-repo.git | ||
| - $HOME/spack/bin/spack repo add $HOME/sds-repo.git | ||
| - $HOME/spack/bin/spack install margo | ||
| - git config --global http.sslVerify true | ||
| # prepare build environment | ||
| - . $HOME/spack/share/spack/setup-env.sh | ||
| - spack install leveldb | ||
| - spack install [email protected] | ||
| - spack install flatcc | ||
| - spack install margo^mercury+bmi~boostsys | ||
| # prepare build environment | ||
| - spack load environment-modules | ||
| - source <(spack module tcl loads leveldb [email protected] flatcc mercury argobots margo) | ||
| - eval $(./scripts/git_log_test_env.sh) | ||
|
|
@@ -39,7 +73,7 @@ script: | |
| # Force git to update the shallow clone and include tags so git-describe works | ||
| - git fetch --unshallow --tags | ||
| - sh autogen.sh | ||
| - ./configure || cat config.log | ||
| - ./configure --enable-fortran || cat config.log | ||
| - make -k && make distcheck | ||
| - ./scripts/checkpatch.sh || test "$TEST_CHECKPATCH_ALLOW_FAILURE" = yes | ||
|
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||
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