This repo contains the source code for the analysis conducted in the research article: "Automation Assisted Anaerobic Phenotyping For Metabolic Engineering" - Kaushik Raj, Naveen Venayak, Patrick Diep, Sai Akhil Golla, Alexander F. Yakunin, and Radhakrishnan Mahadevan.
Folder Descriptions
-
Anaerobicity/: ipynb and raw data for experiments determining anaerobicity using different films and the effect of mineral oil on growth of E. coli
-
Calibration/air_gap: ipynb and raw data for experiments showing loss of calibration upon introducing air gap
-
Calibration/calibration: ipynb and raw data for experiments showing calibration efficacy
-
case_study_1_enzyme_kinetics/: processed activity data and ipynb for experiment determining YqjM activity
-
case_study_2_bioreactor_scaledown/: raw data and ipynb for experiments showing effect of varying glucose concentrations, reducing agents on microplate phenotypes. Also has files from experiments showing variation of phenotype with preculture conditions.
-
Decontamination/: processed data and ipynb for experiments showing efficacy of different decontamination techniques