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Add an option to specify the minimum variant allele frequency Continuous Integration #447: Commit f98f15c pushed by Redmar-van-den-Berg
April 24, 2025 09:20 23m 49s main
main
April 24, 2025 09:20 23m 49s
Formatting Continuous Integration #446: Commit 74e1411 pushed by Redmar-van-den-Berg
February 27, 2025 10:49 6m 14s main
main
February 27, 2025 10:49 6m 14s
Add MECOM exons to use to quantify gene expression Continuous Integration #445: Commit b3a7edc pushed by Redmar-van-den-Berg
February 27, 2025 10:35 1m 41s main
main
February 27, 2025 10:35 1m 41s
Remove verbose flag from VarDict Continuous Integration #444: Commit 4a5e9e5 pushed by Redmar-van-den-Berg
February 25, 2025 10:24 6m 31s main
main
February 25, 2025 10:24 6m 31s
Rename the bam file inside the STAR rule Continuous Integration #443: Commit 3fed419 pushed by Redmar-van-den-Berg
February 25, 2025 06:48 6m 23s main
main
February 25, 2025 06:48 6m 23s
Rename the bam file inside the STAR rule Continuous Integration #442: Pull request #38 opened by Redmar-van-den-Berg
February 25, 2025 06:31 7m 45s index_bam
index_bam
February 25, 2025 06:31 7m 45s
Exclude sequali duplication metrics from the MultiQC report Continuous Integration #441: Commit 960bc4d pushed by Redmar-van-den-Berg
February 24, 2025 10:14 20m 54s main
main
February 24, 2025 10:14 20m 54s
Remove --hgvsg_use_accession due to a bug in VEP Continuous Integration #440: Commit a5f702d pushed by Redmar-van-den-Berg
February 21, 2025 06:54 19m 39s main
main
February 21, 2025 06:54 19m 39s
Rename the bam file inside the STAR rule Continuous Integration #439: Commit c128bf8 pushed by Redmar-van-den-Berg
February 19, 2025 13:38 20m 49s index_bam
index_bam
February 19, 2025 13:38 20m 49s
Use copy instead of ln to work around Snakemake clock skew bug Continuous Integration #438: Commit 29ac77c pushed by Redmar-van-den-Berg
February 18, 2025 12:58 9m 46s main
main
February 18, 2025 12:58 9m 46s
Add workaround for Snakemake bug Continuous Integration #437: Commit 057e1d1 pushed by Redmar-van-den-Berg
February 18, 2025 06:45 24m 14s main
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February 18, 2025 06:45 24m 14s
Improve table layout in PDF report Continuous Integration #436: Commit 51dfeb6 pushed by Redmar-van-den-Berg
February 17, 2025 07:43 25m 14s main
main
February 17, 2025 07:43 25m 14s
Pass the ribosomal intervals only to RnaSeqMetrics Continuous Integration #435: Commit 20f68b7 pushed by Redmar-van-den-Berg
February 6, 2025 13:49 13m 9s main
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February 6, 2025 13:49 13m 9s
Fix report tests to match new variant table Continuous Integration #434: Commit dabf2c7 pushed by Redmar-van-den-Berg
February 5, 2025 14:27 11m 23s main
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February 5, 2025 14:27 11m 23s
Use picard CollectMultipleMetrics Continuous Integration #433: Commit 7aeaa6c pushed by Redmar-van-den-Berg
February 5, 2025 14:03 8m 4s main
main
February 5, 2025 14:03 8m 4s
Add genomic HGVS to the PDF report, add column for exon number Continuous Integration #432: Commit 7d66741 pushed by Redmar-van-den-Berg
February 5, 2025 08:32 8m 33s main
main
February 5, 2025 08:32 8m 33s
Move link check to release tests Continuous Integration #431: Commit adb95d2 pushed by Redmar-van-den-Berg
February 5, 2025 07:43 7m 52s main
main
February 5, 2025 07:43 7m 52s
Include genomic HGVS in VEP annotation Continuous Integration #430: Commit ce48223 pushed by Redmar-van-den-Berg
February 5, 2025 07:25 1m 12s main
main
February 5, 2025 07:25 1m 12s
Run VEP vep_cache folder or with GTF/FASTA Continuous Integration #429: Commit ffeb955 pushed by Redmar-van-den-Berg
February 4, 2025 13:06 9m 10s main
main
February 4, 2025 13:06 9m 10s
Fix a bug with caching of report assets Continuous Integration #428: Commit e1fa04d pushed by Redmar-van-den-Berg
January 30, 2025 17:33 16m 41s main
main
January 30, 2025 17:33 16m 41s
Run VarDict job wiht 8 threads Continuous Integration #427: Commit 806ddf8 pushed by Redmar-van-den-Berg
January 29, 2025 14:12 16m 26s main
main
January 29, 2025 14:12 16m 26s
Include all report files as input Continuous Integration #426: Commit 1bb763c pushed by Redmar-van-den-Berg
January 28, 2025 11:58 23m 47s main
main
January 28, 2025 11:58 23m 47s
Revert "Rename the BAM file in the STAR rule" Continuous Integration #425: Commit 8173676 pushed by Redmar-van-den-Berg
January 28, 2025 10:35 2m 7s main
main
January 28, 2025 10:35 2m 7s
Rename the BAM file in the STAR rule Continuous Integration #424: Commit 01de29f pushed by Redmar-van-den-Berg
January 23, 2025 06:57 11m 6s main
main
January 23, 2025 06:57 11m 6s
Add slurm executor to conda environment Continuous Integration #423: Commit 0041049 pushed by Redmar-van-den-Berg
January 22, 2025 13:53 32m 13s main
main
January 22, 2025 13:53 32m 13s