Fix LightningCLI loading of hyperparameters from ckpt_path failing for subclass model mode

src/lightning/pytorch/CHANGELOG.md

@@ -49,6 +49,9 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 - Fixed preventing recursive symlink creation iwhen `save_last='link'` and `save_top_k=-1` ([#21186](https://github.com/Lightning-AI/pytorch-lightning/pull/21186))
 
 
+- Fixed `LightningCLI` loading of hyperparameters from `ckpt_path` failing for subclass model mode ([#21246](https://github.com/Lightning-AI/pytorch-lightning/pull/21246))
+
+
 ---
 
 ## [2.5.5] - 2025-09-05

src/lightning/pytorch/cli.py

@@ -564,6 +564,11 @@ def _parse_ckpt_path(self) -> None:
             hparams.pop("_instantiator", None)
             if not hparams:
                 return
+            if "_class_path" in hparams:
+                hparams = {
+                    "class_path": hparams["_class_path"],
+                    "dict_kwargs": {k: v for k, v in hparams.items() if k != "_class_path"},
+                }
             hparams = {self.config.subcommand: {"model": hparams}}
             try:
                 self.config = self.parser.parse_object(hparams, self.config)

tests/tests_pytorch/test_cli.py

@@ -491,6 +491,7 @@ class BoringCkptPathModel(BoringModel):
     def __init__(self, out_dim: int = 2, hidden_dim: int = 2) -> None:
         super().__init__()
         self.save_hyperparameters()
+        self.hidden_dim = hidden_dim
         self.layer = torch.nn.Linear(32, out_dim)
 
 
@@ -526,6 +527,41 @@ def add_arguments_to_parser(self, parser):
     assert "Parsing of ckpt_path hyperparameters failed" in err.getvalue()
 
 
+class BoringCkptPathSubclass(BoringCkptPathModel):
+    def __init__(self, extra: bool = True, **kwargs) -> None:
+        super().__init__(**kwargs)
+        self.extra = extra
+
+
+def test_lightning_cli_ckpt_path_argument_hparams_subclass_mode(cleandir):
+    class CkptPathCLI(LightningCLI):
+        def add_arguments_to_parser(self, parser):
+            parser.link_arguments("model.init_args.out_dim", "model.init_args.hidden_dim", compute_fn=lambda x: x * 2)
+
+    cli_args = ["fit", "--model=BoringCkptPathSubclass", "--model.out_dim=4", "--trainer.max_epochs=1"]
+    with mock.patch("sys.argv", ["any.py"] + cli_args):
+        cli = CkptPathCLI(BoringCkptPathModel, subclass_mode_model=True)
+
+    assert cli.config.fit.model.class_path.endswith(".BoringCkptPathSubclass")
+    assert cli.config.fit.model.init_args == Namespace(out_dim=4, hidden_dim=8, extra=True)
+    hparams_path = Path(cli.trainer.log_dir) / "hparams.yaml"
+    assert hparams_path.is_file()
+    hparams = yaml.safe_load(hparams_path.read_text())
+    assert hparams["out_dim"] == 4
+    assert hparams["hidden_dim"] == 8
+    assert hparams["extra"] is True
+
+    checkpoint_path = next(Path(cli.trainer.log_dir, "checkpoints").glob("*.ckpt"))
+    cli_args = ["predict", "--model=BoringCkptPathModel", f"--ckpt_path={checkpoint_path}"]
+    with mock.patch("sys.argv", ["any.py"] + cli_args):
+        cli = CkptPathCLI(BoringCkptPathModel, subclass_mode_model=True)
+
+    assert isinstance(cli.model, BoringCkptPathSubclass)
+    assert cli.model.hidden_dim == 8
+    assert cli.model.extra is True
+    assert cli.model.layer.out_features == 4
+
+
 def test_lightning_cli_submodules(cleandir):
     class MainModule(BoringModel):
         def __init__(self, submodule1: LightningModule, submodule2: LightningModule, main_param: int = 1):