rename previous example to avoid confusion #497

LinguaPhylo · Jun 18, 2024 · 1660499 · 1660499
1 parent 5eee07b
commit 1660499
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diff --git a/...rth-death/simpleCalibratedBirthDeath.lphy → ...death/simpleRootCalibratedBirthDeath.lphy b/...rth-death/simpleCalibratedBirthDeath.lphy → ...death/simpleRootCalibratedBirthDeath.lphy
@@ -1,5 +1,6 @@
 λ = 10.0;
-tmrca = 0.1;
+tmrca ~ LogNormal(meanlog=-2.3, sdlog=0.1);
+// root node calibration
 ψ ~ BirthDeath(lambda=λ, mu=0.0, n=16, rootAge=tmrca);
 TL = ψ.treeLength();
 rootAge = ψ.rootAge();
diff --git a/...les/birth-death/simpleCalibratedYule.lphy → ...birth-death/simpleRootCalibratedYule.lphy b/...les/birth-death/simpleCalibratedYule.lphy → ...birth-death/simpleRootCalibratedYule.lphy
@@ -1,5 +1,6 @@
 λ = 10.0;
-tmrca = 0.1;
+tmrca ~ LogNormal(meanlog=-2.3, sdlog=0.1);
+// root node calibration
 ψ ~ Yule(lambda=λ, n=16, rootAge=tmrca);
 TL = ψ.treeLength();
 rootAge = ψ.rootAge();