Update intro.html #14
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name: Website | |
on: | |
push: | |
branches: | |
- gh-pages | |
- main | |
pull_request: [] | |
jobs: | |
build-website: | |
if: ${{ !endsWith(github.repository, '/styles') }} | |
runs-on: ubuntu-20.04 | |
env: | |
RSPM: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
defaults: | |
run: | |
shell: bash | |
steps: | |
- name: Set up Ruby | |
uses: ruby/setup-ruby@v1 | |
with: | |
ruby-version: '3.0' | |
bundler-cache: true | |
- name: Set up Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: '3.x' | |
- name: Install GitHub Pages, Bundler, and kramdown gems | |
run: | | |
gem install github-pages bundler kramdown kramdown-parser-gfm | |
- name: Install Python modules | |
run: | | |
python3 -m pip install --upgrade pip setuptools wheel pyyaml==5.3.1 requests | |
- name: Checkout the lesson | |
uses: actions/checkout@master | |
with: | |
fetch-depth: 0 | |
ref: ${{ github.event.pull_request.head.sha }} | |
- name: Look for R-markdown files | |
id: check-rmd | |
run: | | |
echo "count=$(shopt -s nullglob; files=($(find . -iname '*.Rmd')); echo ${#files[@]})" >> $GITHUB_OUTPUT | |
- name: Set up R | |
if: steps.check-rmd.outputs.count != 0 | |
uses: r-lib/actions/setup-r@v2 | |
with: | |
use-public-rspm: true | |
install-r: false | |
- name: Restore R Cache | |
if: steps.check-rmd.outputs.count != 0 | |
uses: actions/cache@v2 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
- name: Install needed packages | |
if: steps.check-rmd.outputs.count != 0 | |
run: | | |
source('bin/dependencies.R') | |
install_required_packages() | |
shell: Rscript {0} | |
- name: Query dependencies | |
if: steps.check-rmd.outputs.count != 0 | |
run: | | |
source('bin/dependencies.R') | |
deps <- identify_dependencies() | |
create_description(deps) | |
use_bioc_repos() | |
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
shell: Rscript {0} | |
- name: Install system dependencies for R packages | |
if: steps.check-rmd.outputs.count != 0 | |
run: | | |
while read -r cmd | |
do | |
eval sudo $cmd || echo "Nothing to update" | |
done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")') | |
- name: Render the markdown and confirm that the site can be built | |
run: make site | |
- name: Checkout github pages | |
if: ${{ github.event_name == 'push' && steps.check-rmd.outputs.count != 0 && github.ref != 'refs/heads/gh-pages'}} | |
uses: actions/checkout@master | |
with: | |
ref: gh-pages | |
path: gh-pages | |
- name: Commit and Push | |
if: ${{ github.event_name == 'push' && steps.check-rmd.outputs.count != 0 && github.ref != 'refs/heads/gh-pages'}} | |
run: | | |
# clean up gh-pages | |
cd gh-pages | |
git rm -rf . # remove all previous files | |
git restore --staged . # remove things from the stage | |
cd .. | |
# copy everything into gh-pages site | |
cp -r `ls -A | grep -v 'gh-pages' | grep -v '.git' | grep -v '.bundle/' | grep -v '_site'` gh-pages | |
# move into gh-pages, add, commit, and push | |
cd gh-pages | |
# setup git | |
git config --local user.email "[email protected]" | |
git config --local user.name "GitHub Actions" | |
git add -A . | |
git commit --allow-empty -m "[Github Actions] render website (via ${{ github.sha }})" | |
git push origin gh-pages | |
# return | |
cd .. | |
# waiting for https://github.com/carpentries/styles/issues/551 | |
# to be addressed | |
# - run: make lesson-check-all | |
# if: always() |