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Expand Up @@ -15,7 +15,7 @@ Get started with inference examples which apply the DeepInterpolation principle
| Data Type | Pretrained<br />Model| Sample<br />Data | View <br />:eyes: | Run <br /> ▶️
| :--- | :---: | :---: | --- | --- |
|🔬"Ophys"<br /> (optical physiology<sup>2</sup>)| [🤖](https://github.com/MATLAB-Community-Toolboxes-at-INCF/DeepInterpolation-MATLAB/blob/main/pretrainedModels/pretrained.json#L3)<br /> (AWS, 120 MB) | [💾](sampleData/ophys_tiny_761605196.tif) | [![View Deep-Interpolation-MATLAB on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2F29e7e92d-4639-4178-8e19-739580981e60%2Ffiles%2Fexamples%2Ftiny_ophys_inference.mlx&embed=web) | [![Open in MATLAB Online](https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg)](https://matlab.mathworks.com/open/github/v1?repo=INCF/DeepInterpolation-MATLAB&file=examples/tiny_ophys_inference.mlx)
|⚡"Ephys" (electrophysiology<sup>1</sup>)| [:robot:](https://github.com/MATLAB-Community-Toolboxes-at-INCF/DeepInterpolation-MATLAB/blob/main/pretrainedModels/pretrained#L54.json) | [💾](sampleData/ephys_tiny_continuous.dat2) | [![View Deep-Interpolation-MATLAB on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2F29e7e92d-4639-4178-8e19-739580981e60%2Ffiles%2Fexamples%2Ftiny_ephys_inference.mlx&embed=web) | [![Open in MATLAB Online](https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg)](https://matlab.mathworks.com/open/github/v1?repo=INCF/DeepInterpolation-MATLAB&file=examples/tiny_ephys_inference.mlx)
|⚡"Ephys" (electrophysiology<sup>1</sup>)| [:robot:](https://github.com/MATLAB-Community-Toolboxes-at-INCF/DeepInterpolation-MATLAB/blob/main/pretrainedModels/pretrained.json#L54) | [💾](sampleData/ephys_tiny_continuous.dat2) | [![View Deep-Interpolation-MATLAB on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2F29e7e92d-4639-4178-8e19-739580981e60%2Ffiles%2Fexamples%2Ftiny_ephys_inference.mlx&embed=web) | [![Open in MATLAB Online](https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg)](https://matlab.mathworks.com/open/github/v1?repo=INCF/DeepInterpolation-MATLAB&file=examples/tiny_ephys_inference.mlx)


<sub><sup>1</sup> via Neuropixels neural probes <sup>2</sup> via two-photon (2P) calcium imaging<sub>
Expand All @@ -29,8 +29,8 @@ Expected use cases involve training on a user's representative or actual dataset

| Data Type | Pretrained Model | Sample Data | View :eyes:| Run ▶️
|---| :---: |---|---|---|
| 🔬"Ophys" (optical physiology<sup>1</sup>)| [:robot:](https://github.com/MATLAB-Community-Toolboxes-at-INCF/DeepInterpolation-MATLAB/blob/main/pretrainedModels/pretrained#L3.json) | [sample data](sampleData/ophys_tiny_761605196.tif) | [![View Deep-Interpolation-MATLAB on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2Fbfd58de9-1242-48ba-81bc-dfe9c37fae6b%2Ffiles%2Fexamples%2Fcustomdatastore_example.mlx&embed=web) | [![Open in MATLAB Online](https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg)](https://matlab.mathworks.com/open/github/v1?repo=INCF/DeepInterpolation-MATLAB&file=examples/tiny_ophys_training.mlx)
| ⚡ Ephys" (electrophysiology<sup>2</sup>) | [:robot:](https://github.com/MATLAB-Community-Toolboxes-at-INCF/DeepInterpolation-MATLAB/blob/main/pretrainedModels/pretrained#L54.json) | [sample data](sampleData/ephys_tiny_continuous.dat2) | [![View Deep-Interpolation-MATLAB on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2F29e7e92d-4639-4178-8e19-739580981e60%2Ffiles%2Fexamples%2Ftiny_ephys_training.mlx&embed=web) | [![Open in MATLAB Online](https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg)](https://matlab.mathworks.com/open/github/v1?repo=INCF/DeepInterpolation-MATLAB&file=examples/tiny_ephys_training.mlx)
| 🔬"Ophys" (optical physiology<sup>1</sup>)| [:robot:](https://github.com/MATLAB-Community-Toolboxes-at-INCF/DeepInterpolation-MATLAB/blob/main/pretrainedModels/pretrained.json#L3) | [sample data](sampleData/ophys_tiny_761605196.tif) | [![View Deep-Interpolation-MATLAB on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2Fbfd58de9-1242-48ba-81bc-dfe9c37fae6b%2Ffiles%2Fexamples%2Fcustomdatastore_example.mlx&embed=web) | [![Open in MATLAB Online](https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg)](https://matlab.mathworks.com/open/github/v1?repo=INCF/DeepInterpolation-MATLAB&file=examples/tiny_ophys_training.mlx)
| ⚡ Ephys" (electrophysiology<sup>2</sup>) | [:robot:](https://github.com/MATLAB-Community-Toolboxes-at-INCF/DeepInterpolation-MATLAB/blob/main/pretrainedModels/pretrained.json#L54) | [sample data](sampleData/ephys_tiny_continuous.dat2) | [![View Deep-Interpolation-MATLAB on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2F29e7e92d-4639-4178-8e19-739580981e60%2Ffiles%2Fexamples%2Ftiny_ephys_training.mlx&embed=web) | [![Open in MATLAB Online](https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg)](https://matlab.mathworks.com/open/github/v1?repo=INCF/DeepInterpolation-MATLAB&file=examples/tiny_ephys_training.mlx)

<sub><sup>1</sup> via two-photon (2P) calcium imaging <sup>2</sup> via Neuropixels neural probes<sub>

Expand All @@ -41,8 +41,8 @@ Expected use cases will involve larger data sizes, for which remote data locatio

| Data Type | Pretrained Model | Public Data Archive | View :eyes: | Run ▶️
|---|:---:|---|---|---|
|🔬"Ophys" (optical physiology) | [:robot:](https://github.com/MATLAB-Community-Toolboxes-at-INCF/DeepInterpolation-MATLAB/blob/main/pretrainedModels/pretrained#L92.json) | [Allen Brain Observatory](http://allen-brain-observatory.s3.amazonaws.com/visual-coding-2p/ophys_movies/ophys_experiment_496908818.h5) (55.6 GB) | [![View Deep-Interpolation-MATLAB on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2F29e7e92d-4639-4178-8e19-739580981e60%2Ffiles%2Fexamples%2Fophys_AllenBrainObservatory.mlx&embed=web) | (\*) |
|🧠 fMRI (functional magnetic resonance imaging) | [:robot:](https://github.com/MATLAB-Community-Toolboxes-at-INCF/DeepInterpolation-MATLAB/blob/main/pretrainedModels/pretrained#L74.json) | [Open Neuro](https://openneuro.org/datasets/ds001246/versions/1.2.1) (18.3 GB)| [![View Deep-Interpolation-MATLAB on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2F29e7e92d-4639-4178-8e19-739580981e60%2Ffiles%2Fexamples%2Ftiny_fMRI_inference.mlx&embed=web) | [![Open in MATLAB Online](https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg)](https://matlab.mathworks.com/open/github/v1?repo=INCF/DeepInterpolation-MATLAB&file=examples/other/fMRI_OpenNeuro.mlx)
|🔬"Ophys" (optical physiology) | [:robot:](https://github.com/MATLAB-Community-Toolboxes-at-INCF/DeepInterpolation-MATLAB/blob/main/pretrainedModels/pretrained.json#L92) | [Allen Brain Observatory](http://allen-brain-observatory.s3.amazonaws.com/visual-coding-2p/ophys_movies/ophys_experiment_496908818.h5) (55.6 GB) | [![View Deep-Interpolation-MATLAB on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2F29e7e92d-4639-4178-8e19-739580981e60%2Ffiles%2Fexamples%2Fophys_AllenBrainObservatory.mlx&embed=web) | (\*) |
|🧠 fMRI (functional magnetic resonance imaging) | [:robot:](https://github.com/MATLAB-Community-Toolboxes-at-INCF/DeepInterpolation-MATLAB/blob/main/pretrainedModels/pretrained.json#L74) | [Open Neuro](https://openneuro.org/datasets/ds001246/versions/1.2.1) (18.3 GB)| [![View Deep-Interpolation-MATLAB on File Exchange](https://www.mathworks.com/matlabcentral/images/matlab-file-exchange.svg)](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2F29e7e92d-4639-4178-8e19-739580981e60%2Ffiles%2Fexamples%2Ftiny_fMRI_inference.mlx&embed=web) | [![Open in MATLAB Online](https://www.mathworks.com/images/responsive/global/open-in-matlab-online.svg)](https://matlab.mathworks.com/open/github/v1?repo=INCF/DeepInterpolation-MATLAB&file=examples/other/fMRI_OpenNeuro.mlx)

<sub>(\*) This data-intensive example is recommended for use on a local machine, not for MATLAB online.</sub>

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