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stevevanhooser authored Apr 20, 2024
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Expand Up @@ -11,10 +11,12 @@ Get started with inference examples using smaller datasets. You can individually

| | Inference Example | Trained Model| Sample data | View | Run
| --- | --- | --- | --- | --- | --- |
|⚡|"Ephys" (electrophysiology, via Neuropixels) | [model](sample_data/2020_02_29_15_28_unet_single_ephys_1024_mean_squared_error-1050.h5) | [sample data](sample_data/ephys_tiny_continuous.dat2) | [:eyes:](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2F29e7e92d-4639-4178-8e19-739580981e60%2Ffiles%2Fexamples%2Ftiny_ephys_inference.mlx&embed=web) | [:arrow_forward:](https://matlab.mathworks.com/open/github/v1?repo=INCF/DeepInterpolation-MATLAB&file=examples/tiny_ephys_inference.mlx)
|🔬|"Ophys" (optical physiology, via calcium imaging) | [model](https://www.dropbox.com/sh/vwxf1uq2j60uj9o/AAC0sZWahCJFBRARoYsw8Nnra/2019_09_11_23_32_unet_single_1024_mean_absolute_error_Ai93-0450.h5?dl=0) (Dropbox, 120 MB) | [sample data](sample_data/ophys_tiny_761605196.tif) | [:eyes:](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2F29e7e92d-4639-4178-8e19-739580981e60%2Ffiles%2Fexamples%2Ftiny_ophys_inference.mlx&embed=web) | [:arrow_forward:](https://matlab.mathworks.com/open/github/v1?repo=INCF/DeepInterpolation-MATLAB&file=examples/tiny_ophys_inference.mlx)
|⚡|"Ephys" (electrophysiology<sup>1</sup>) | [model](sample_data/2020_02_29_15_28_unet_single_ephys_1024_mean_squared_error-1050.h5) | [sample data](sample_data/ephys_tiny_continuous.dat2) | [:eyes:](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2F29e7e92d-4639-4178-8e19-739580981e60%2Ffiles%2Fexamples%2Ftiny_ephys_inference.mlx&embed=web) | [:arrow_forward:](https://matlab.mathworks.com/open/github/v1?repo=INCF/DeepInterpolation-MATLAB&file=examples/tiny_ephys_inference.mlx)
|🔬|"Ophys" (optical physiology<sup>2</sup>) | [model](https://www.dropbox.com/sh/vwxf1uq2j60uj9o/AAC0sZWahCJFBRARoYsw8Nnra/2019_09_11_23_32_unet_single_1024_mean_absolute_error_Ai93-0450.h5?dl=0) (Dropbox, 120 MB) | [sample data](sample_data/ophys_tiny_761605196.tif) | [:eyes:](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2F29e7e92d-4639-4178-8e19-739580981e60%2Ffiles%2Fexamples%2Ftiny_ophys_inference.mlx&embed=web) | [:arrow_forward:](https://matlab.mathworks.com/open/github/v1?repo=INCF/DeepInterpolation-MATLAB&file=examples/tiny_ophys_inference.mlx)
|🧠| fMRI (functional magnetic resonance imaging) | [model](https://www.dropbox.com/sh/ngx5plndmd4jsca/AAAqeFE9Bw6g72Cm9SC4QkMxa/2020_08_28_00_25_fmri_unet_denoiser_mean_absolute_error_2020_08_28_00_25_model.h5) (Dropbox, 407.55 KB)| [sample_data](https://openneuro.org/crn/datasets/ds001246/snapshots/1.2.1/files/sub-01:ses-perceptionTest01:func:sub-01_ses-perceptionTest01_task-perception_run-01_bold.nii.gz) (OpenNeuro)| [:eyes:](https://viewer.mathworks.com/?viewer=live_code&url=https%3A%2F%2Fwww.mathworks.com%2Fmatlabcentral%2Fmlc-downloads%2Fdownloads%2F84c22101-bffc-435a-910c-b0c7dcd5b386%2F29e7e92d-4639-4178-8e19-739580981e60%2Ffiles%2Fexamples%2Ftiny_fMRI_inference.mlx&embed=web) | [:arrow_forward:](https://matlab.mathworks.com/open/github/v1?repo=INCF/DeepInterpolation-MATLAB&file=examples/tiny_fMRI_inference.mlx)

<sup>1</sup> via Neuropixels neural probes
<sup>2</sup> via two-photon (2P) calcium imaging

#### Requirements
* [Deep Learning Toolbox Converter for TensorFlow Models](https://nl.mathworks.com/matlabcentral/fileexchange/64649-deep-learning-toolbox-converter-for-tensorflow-models) support package.
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