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Scope
Kristy Horan edited this page Oct 8, 2019
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This repository contains all instructions for the implementation of Meningotype, a software tool the detects PCR fragments from WGS to infer N. meningiditis serogroup, porA-type, fetA-type and MLST. Interpretation and application of these results is detailed in the Interpretation section of this page.
This tool takes as input assemblies (single or a list).
A tab-delimited file with SAMPLE ID, SEROGROUP, MLST, porA and fetA. Other types are not performed unless specified and these columns appear as a -
| SOP/Form number | Title |
|---|---|
| V0152_MMS144 | Validation and Verification Protocol for SOP MMS144 |
| MMS103 | Whole genome sequencing |
| V0113_MMS103 | Validation of MMS103 (Whole Genome Sequencing) |
| BIS001 | Read data quality control |