example(gwe-barends): "thermal bleeding" (conduction) example based on Barends solution #2215
Workflow file for this run
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| name: CI | |
| env: | |
| DISTNAME: mf6examples | |
| TAG: current | |
| on: | |
| schedule: | |
| - cron: '0 2 * * *' # run at 2 AM UTC | |
| push: | |
| paths-ignore: | |
| - 'README.md' | |
| - 'DEVELOPER.md' | |
| pull_request: | |
| branches: | |
| - master | |
| - develop | |
| paths-ignore: | |
| - 'README.md' | |
| - 'DEVELOPER.md' | |
| workflow_dispatch: | |
| jobs: | |
| lint: | |
| name: Lint/format example scripts | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| steps: | |
| - name: Checkout MODFLOW 6 examples | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.9 | |
| - name: Install Python packages | |
| working-directory: etc | |
| run: | | |
| python --version | |
| python -m pip install --upgrade pip setuptools wheel | |
| pip install -r requirements.pip.txt | |
| - name: Lint | |
| run: ruff check . | |
| - name: Format | |
| run: ruff format . --check | |
| dist: | |
| name: Build example models | |
| runs-on: ubuntu-latest | |
| needs: lint | |
| steps: | |
| - name: Checkout MODFLOW6 examples | |
| uses: actions/checkout@v4 | |
| with: | |
| path: modflow6-examples | |
| - name: Checkout MODFLOW 6 | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: MODFLOW-USGS/modflow6 | |
| path: modflow6 | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.9 | |
| - name: Install Python packages | |
| working-directory: modflow6-examples/etc | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| pip install -r requirements.pip.txt | |
| pip install -r requirements.usgs.txt | |
| python -m ipykernel install --name python_kernel --user | |
| - name: Update FloPy classes | |
| run: python -m flopy.mf6.utils.generate_classes --ref develop --no-backup | |
| - name: Install MODFLOW executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Build MODFLOW 6 | |
| working-directory: modflow6 | |
| run: | | |
| meson setup builddir -Ddebug=false --prefix=$(pwd) --libdir=bin | |
| meson install -C builddir | |
| meson test --verbose --no-rebuild -C builddir | |
| - name: Install MODFLOW 6 | |
| working-directory: modflow6 | |
| run: cp bin/mf6 ~/.local/bin/modflow/ | |
| - name: Create example models | |
| working-directory: modflow6-examples/autotest | |
| # run the scripts via pytest without running the models, just build input files | |
| run: pytest -v -n=auto --durations=0 test_scripts.py --init | |
| - name: Make zipfile | |
| working-directory: modflow6-examples | |
| run: | | |
| import shutil | |
| shutil.make_archive("${{ env.DISTNAME }}", "zip", "examples") | |
| shell: python | |
| - name: Upload zipfile | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.DISTNAME }}.zip | |
| path: modflow6-examples/${{ env.DISTNAME }}.zip | |
| docs: | |
| name: Run examples, make docs | |
| runs-on: ubuntu-latest | |
| needs: lint | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python: [3.9, "3.10", "3.11", "3.12"] | |
| steps: | |
| - name: Checkout MODFLOW 6 examples | |
| uses: actions/checkout@v4 | |
| with: | |
| path: modflow6-examples | |
| - name: Checkout MODFLOW 6 | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: MODFLOW-USGS/modflow6 | |
| path: modflow6 | |
| - name: Checkout usgslatex | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: MODFLOW-USGS/usgslatex | |
| path: usgslatex | |
| - name: Install LaTeX and extra fonts | |
| run: | | |
| sudo apt-get update | |
| sudo apt install texlive-latex-extra texlive-science fonts-liberation | |
| - name: Install USGS styles and fonts | |
| working-directory: usgslatex/usgsLaTeX | |
| run: sudo ./install.sh --all-users | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Set up headless display | |
| uses: pyvista/setup-headless-display-action@v2 | |
| - name: Install Python packages | |
| working-directory: modflow6-examples/etc | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| pip install -r requirements.pip.txt | |
| pip install -r requirements.usgs.txt | |
| python -m ipykernel install --name python_kernel --user | |
| - name: Update FloPy classes | |
| run: python -m flopy.mf6.utils.generate_classes --ref develop --no-backup | |
| - name: Install MODFLOW executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Build MODFLOW 6 | |
| working-directory: modflow6 | |
| run: | | |
| meson setup builddir -Ddebug=false --prefix=$(pwd) --libdir=bin | |
| meson install -C builddir | |
| meson test --verbose --no-rebuild -C builddir | |
| - name: Install MODFLOW 6 | |
| working-directory: modflow6 | |
| run: cp bin/mf6 ~/.local/bin/modflow/ | |
| - name: Run examples, make plots | |
| working-directory: modflow6-examples/autotest | |
| run: pytest -v -n=auto --durations=0 test_scripts.py --plot | |
| - name: Run postprocessing | |
| working-directory: modflow6-examples/scripts | |
| if: matrix.python == '3.9' | |
| run: python process-scripts.py | |
| - name: Build PDF document | |
| working-directory: modflow6-examples/doc | |
| if: matrix.python == '3.9' | |
| run: ./build-pdf.sh | |
| - name: Move PDF document | |
| working-directory: modflow6-examples | |
| if: matrix.python == '3.9' | |
| run: mv doc/${{ env.DISTNAME }}.pdf ${{ env.DISTNAME }}.pdf | |
| - name: Upload PDF document | |
| if: matrix.python == '3.9' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{ env.DISTNAME}}.pdf | |
| path: modflow6-examples/${{ env.DISTNAME }}.pdf | |
| # delete the latest if needed and make a new release | |
| release: | |
| name: Make a release | |
| needs: [ dist, docs ] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout MODFLOW6 examples | |
| uses: actions/checkout@v4 | |
| - name: Get current time | |
| uses: josStorer/get-current-time@v2 | |
| id: time | |
| with: | |
| format: MM/DD/YYYY HH:mm | |
| - name: Download ${{ env.DISTNAME }}.pdf | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: ${{ env.DISTNAME }}.pdf | |
| path: ${{ env.TAG }} | |
| - name: Download ${{ env.DISTNAME }}.zip | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: ${{ env.DISTNAME }}.zip | |
| path: ${{ env.TAG }} | |
| - name: List release assets | |
| run: ls -R ${{ env.TAG }} | |
| - name: Delete latest release | |
| if: | | |
| github.repository_owner == 'MODFLOW-USGS' && | |
| github.ref_name == 'master' && | |
| github.event_name == 'push' | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: gh release delete $TAG -y --cleanup-tag | |
| - name: Create new release | |
| if: | | |
| github.repository_owner == 'MODFLOW-USGS' && | |
| github.ref_name == 'master' && | |
| github.event_name == 'push' | |
| uses: ncipollo/release-action@v1 | |
| with: | |
| tag: ${{ env.TAG }} | |
| name: Latest | |
| body: "MODFLOW 6 examples: built ${{ steps.time.outputs.formattedTime }}" | |
| allowUpdates: true | |
| draft: false | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload release assets | |
| if: | | |
| github.repository_owner == 'MODFLOW-USGS' && | |
| github.ref_name == 'master' && | |
| github.event_name == 'push' | |
| uses: svenstaro/upload-release-action@v2 | |
| with: | |
| repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| file: ${{ env.TAG }}/* | |
| tag: ${{ env.TAG }} | |
| overwrite: true | |
| file_glob: true |