refactor: run nbQA tools pyupgrade, isort and black #1364
Workflow file for this run
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| name: rtd | |
| on: | |
| schedule: | |
| - cron: '0 2 * * *' # run at 2 AM UTC | |
| push: | |
| branches: [ master ] | |
| paths-ignore: | |
| - 'README.md' | |
| - 'DEVELOPER.md' | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| rtd_build: | |
| name: rtd-build | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| env: | |
| script-directory: scripts | |
| etc-directory: etc | |
| defaults: | |
| run: | |
| shell: bash | |
| if: github.repository_owner == 'MODFLOW-USGS' | |
| steps: | |
| - name: Checkout MODFLOW6 examples repo | |
| uses: actions/checkout@v3 | |
| - name: Output repo information | |
| run: | | |
| echo ${{ github.repository_owner }} | |
| echo ${{ github.repository }} | |
| echo ${{ github.ref }} | |
| echo ${{ github.event_name }} | |
| echo ${{ github.sha }} | |
| - name: Install TeX Live and additional TrueType fonts | |
| run: | | |
| sudo apt-get update | |
| sudo apt install texlive-latex-extra texlive-science fonts-liberation | |
| - name: Install pandoc | |
| run: | | |
| wget https://github.com/jgm/pandoc/releases/download/2.11.2/pandoc-2.11.2-linux-amd64.tar.gz | |
| sudo tar xvzf pandoc-2.11.2-linux-amd64.tar.gz --strip-components=1 -C /usr/local | |
| pandoc --version | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install Python packages | |
| run: | | |
| python -m pip install --upgrade pip setuptools wheel | |
| pip install -r requirements.pip.txt | |
| pip install -r requirements.usgs.txt | |
| python -m ipykernel install --name python_kernel --user | |
| working-directory: ${{env.etc-directory}} | |
| - name: Update flopy MODFLOW 6 classes | |
| run: | | |
| import flopy | |
| flopy.mf6.utils.generate_classes(branch="develop", backup=False) | |
| shell: python | |
| - name: Install MODFLOW executables release | |
| uses: modflowpy/install-modflow-action@v1 | |
| - name: Install MODFLOW nightly-build executables | |
| uses: modflowpy/install-modflow-action@v1 | |
| with: | |
| repo: modflow6-nightly-build | |
| - name: Run scripts without model runs | |
| run: | | |
| pytest -v -n=auto --durations=0 ci_build_files.py | |
| working-directory: ${{env.etc-directory}} | |
| - name: Run processing script | |
| run: | | |
| python process-scripts.py | |
| working-directory: ${{env.script-directory}} | |
| - name: Run notebooks with jupytext for ReadtheDocs | |
| run: | | |
| pytest -v -n=auto --durations=0 ci_run_notebooks.py | |
| working-directory: ${{env.etc-directory}} | |
| - name: Create package tables and examples.rst for ReadtheDocs | |
| run: | | |
| python ci_create_examples_rst.py | |
| working-directory: ${{env.etc-directory}} | |
| - name: List example rst files for ReadtheDocs | |
| run: | | |
| ls -R .doc/_examples/ | |
| - name: List example image files for ReadtheDocs | |
| run: | | |
| ls -R .doc/_images/ | |
| - name: List example notebook files for ReadtheDocs | |
| run: | | |
| ls -R .doc/_notebooks/ | |
| - name: Upload completed jupyter notebooks as an artifact for ReadtheDocs | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: rtd-files-for-${{ github.sha }} | |
| path: | | |
| .doc/introduction.md | |
| .doc/examples.rst | |
| .doc/_examples | |
| .doc/_images | |
| .doc/_notebooks | |
| # trigger rtd if "rtd_build" job was successful | |
| rtd_trigger: | |
| name: rtd-trigger | |
| needs: rtd_build | |
| runs-on: ubuntu-latest | |
| if: github.repository_owner == 'MODFLOW-USGS' && github.event_name == 'push' | |
| steps: | |
| - name: Checkout MODFLOW6 examples repo | |
| uses: actions/checkout@v3 | |
| - name: Trigger RTDs build on push to repo branches | |
| uses: dfm/rtds-action@v1 | |
| with: | |
| webhook_url: ${{ secrets.RTDS_WEBHOOK_URL }} | |
| webhook_token: ${{ secrets.RTDS_WEBHOOK_TOKEN }} | |
| commit_ref: ${{ github.ref }} |