Minor doc updates #101
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| name: Unit test | |
| on: | |
| push: | |
| branches: [master, development] | |
| pull_request: | |
| branches: [master] | |
| jobs: | |
| build: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest] | |
| python-version: [3.7] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python version | |
| run: python -c "import sys; print(sys.version)" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 | |
| pip install -r requirements.txt | |
| - name: Additional dependency for MaxOSX for XGBoost | |
| run: | | |
| brew install libomp | |
| if: matrix.os == 'macos-latest' | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics --exclude=WORC_config.py | |
| # exit-zero treats all errors as warnings. | |
| flake8 . --count --exit-zero --statistics --max-line-length=1000 --exclude=WORC_config.py,*elastixtools* | |
| - name: Install WORC package itself | |
| run: python setup.py -q install | |
| - name: Clone the WORC Tutorial and run as test | |
| run: | | |
| git clone --single-branch --branch develop https://github.com/MStarmans91/WORCTutorial | |
| python WORCTutorial/WORCTutorialSimple.py | |
| env: | |
| WORCDEBUG: true | |
| - name: Debugging on Linux | |
| run: | | |
| fastr trace /tmp/WORC_Example_STWStrategyHN/__sink_data__.json --sinks features_train_CT_0_predict --samples HN1331 | |
| fastr trace /tmp/WORC_Example_STWStrategyHN/__sink_data__.json --sinks classification --samples all | |
| fastr trace /tmp/WORC_Example_STWStrategyHN/__sink_data__.json --sinks performance --samples all | |
| fastr trace /tmp/GS/DEBUG_0/tmp/__sink_data__.json --sinks output --samples id_0__0000__0000 | |
| if: matrix.os == 'ubuntu-latest' | |
| - name: Debugging on Windows | |
| run: | | |
| fastr trace "C:\Users\RUNNER~1\AppData\Local\Temp\WORC_Example_STWStrategyHN\__sink_data__.json" --sinks features_train_CT_0_predict --samples HN1331 | |
| fastr trace "C:\Users\RUNNER~1\AppData\Local\Temp\WORC_Example_STWStrategyHN\__sink_data__.json" --sinks classification --samples all | |
| fastr trace "C:\Users\RUNNER~1\AppData\Local\Temp\WORC_Example_STWStrategyHN\__sink_data__.json" --sinks performance --samples all | |
| fastr trace "C:\Users\RUNNER~1\AppData\Local\Temp\GS\DEBUG_0\tmp\__sink_data__.json" --sinks output --samples id_0__0000__0000 | |
| if: matrix.os == 'windows-latest' | |
| - name: Debugging on MaxOSX | |
| run: | | |
| fastr trace WORCTutorial/WORC_Example_STWStrategyHN/__sink_data__.json --sinks features_train_CT_0_predict --samples HN1331 | |
| fastr trace WORCTutorial/WORC_Example_STWStrategyHN/__sink_data__.json --sinks classification --samples all | |
| fastr trace WORCTutorial/WORC_Example_STWStrategyHN/__sink_data__.json --sinks performance --samples all | |
| fastr trace WORCTutorial/GS/DEBUG_0/tmp/__sink_data__.json --sinks output --samples id_0__0000__0000 | |
| if: matrix.os == 'macos-latest' | |
| - name: Run additional test for regression on Linux | |
| run: | | |
| rm -r /tmp/GS/DEBUG_0 | |
| python WORC/tests/WORCTutorialSimple_unittest_regression.py | |
| fastr trace /tmp/WORC_Example_STWStrategyHN_Regression/__sink_data__.json --sinks classification --samples all | |
| fastr trace /tmp/WORC_Example_STWStrategyHN_Regression/__sink_data__.json --sinks performance --samples all | |
| fastr trace /tmp/GS/DEBUG_0/tmp/__sink_data__.json --sinks output --samples id_0__0000__0000 | |
| env: | |
| WORCDEBUG: true | |
| if: matrix.os == 'ubuntu-latest' | |
| - name: Run additional tests for multiclass on Linux | |
| run: | | |
| rm -r /tmp/GS/DEBUG_0 | |
| python WORC/tests/WORCTutorialSimple_unittest_multiclass.py | |
| fastr trace /tmp/WORC_Example_STWStrategyHN_Multiclass/__sink_data__.json --sinks classification --samples all | |
| fastr trace /tmp/WORC_Example_STWStrategyHN_Multiclass/__sink_data__.json --sinks performance --samples all | |
| fastr trace /tmp/GS/DEBUG_0/tmp/__sink_data__.json --sinks output --samples id_0__0000__0000 | |
| env: | |
| WORCDEBUG: true | |
| if: matrix.os == 'ubuntu-latest' |